Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0951
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.66 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   8.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 591 LKVCQIQQ*VLCRLVLKYDIETDERIF 671
           LK C  +  ++ R+  KYD++TD  IF
Sbjct: 411 LKACSSEV-MMLRMARKYDVQTDSIIF 436


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/61 (22%), Positives = 24/61 (39%)
 Frame = +2

Query: 86  KVLILAWKLNASQMCRFTKSEFVQGLKNMKTDSIKGIQHKLGDISVEMQREPEQFKVCID 265
           KV+ L W     +M R +  E  +  K+ K   + G     GD+ +  +         +D
Sbjct: 333 KVVFLYWLPCILRMSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSKSLLANVLD 392

Query: 266 L 268
           L
Sbjct: 393 L 393


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 531 EYENDQVNQNVTKSSIKIQGLKVCQIQQ 614
           E+E + V+    KS   + G K+ Q+Q+
Sbjct: 70  EFEEETVDGRKVKSVCTLDGNKLIQVQK 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,829
Number of Sequences: 438
Number of extensions: 4365
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)