Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0951
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12760.1 68416.m01593 expressed protein similar to RP42 prote...    74   1e-13
At1g15860.1 68414.m01903 expressed protein                             58   1e-08
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ...    57   2e-08
At5g62350.1 68418.m07826 invertase/pectin methylesterase inhibit...    31   1.3  
At5g37630.1 68418.m04532 chromosome condensation family protein ...    28   6.8  
At3g43610.1 68416.m04640 tubulin family protein                        28   6.8  
At2g38500.1 68415.m04730 expressed protein                             28   9.0  

>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
           [Homo sapiens] GI:9896486; contains Pfam profile
           PF00627: UBA/TS-N domain, PF03556: Domain of unknown
           function (DUF298)
          Length = 250

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 33/73 (45%), Positives = 47/73 (64%)
 Frame = +2

Query: 20  DAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEFVQGLKNMKTDSIKGIQ 199
           D ILAEGI  LCNDL + P D   L+L+W +NA+  C F++ EF+ GL+ +  DSI  +Q
Sbjct: 73  DMILAEGISVLCNDLEVEPQDIVTLVLSWHMNAATACEFSRQEFISGLQALGVDSIGKLQ 132

Query: 200 HKLGDISVEMQRE 238
            KL  +  E++ E
Sbjct: 133 EKLPFMRSELKDE 145



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/82 (37%), Positives = 43/82 (52%)
 Frame = +1

Query: 265 FTFKFGLDVSSGQRILPSDIAIVLWRLVFTNNEPPILDRWLNYLEKNPQIRGIPKDTWYM 444
           + F FG     GQ+ L  D AI +W+L+F   E P++  W ++L+     + I KDTW  
Sbjct: 152 YNFAFGWAKEKGQKSLALDTAIGMWQLLFAEREWPLVTHWCDFLQDRHN-KAISKDTWAQ 210

Query: 445 FLNFCEFVGNDLSSYDDTEAWP 510
            L F   V   LS+YD   AWP
Sbjct: 211 LLEFSRMVDPVLSNYDAEGAWP 232


>At1g15860.1 68414.m01903 expressed protein
          Length = 225

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +2

Query: 35  EGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEFVQGLKNMKTDSIKGIQHKLGD 214
           EGIE LC++L +S  D ++L+LAWK+ A +   FT  E+ +GLK ++ D+I  ++  L +
Sbjct: 55  EGIEELCSNLEVSHTDIRILMLAWKMKAEKQGYFTHEEWRRGLKALRADTINKLKKALPE 114

Query: 215 ISVE 226
           +  E
Sbjct: 115 LEKE 118


>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
           PF03556: Domain of unknown function (DUF298)
          Length = 295

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 30/83 (36%), Positives = 43/83 (51%)
 Frame = +1

Query: 265 FTFKFGLDVSSGQRILPSDIAIVLWRLVFTNNEPPILDRWLNYLEKNPQIRGIPKDTWYM 444
           + F F +   +GQ+ +    AI  W+LV       +L+RW +++EKN Q   I +DTW  
Sbjct: 90  YDFVFFMCRENGQKNITISRAITAWKLVLAGRFR-LLNRWCDFIEKN-QRHNISEDTWQQ 147

Query: 445 FLNFCEFVGNDLSSYDDTEAWPV 513
            L F   V  +L  YD   AWPV
Sbjct: 148 VLAFSRCVHENLEGYDSEGAWPV 170


>At5g62350.1 68418.m07826 invertase/pectin methylesterase inhibitor
           family protein / DC 1.2 homolog (FL5-2I22) similar to
           SP|Q42534 Pectinesterase 2 precursor (EC 3.1.1.11)
           (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana};
           contains Pfam profile PF04043: Plant invertase/pectin
           methylesterase inhibitor; FL5-2I22 mRNA for DC 1.2
           homolog, partial cds GI:11127598
          Length = 202

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 23  AILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEF--VQGLKNMKTDSIKGI 196
           A+    +    ND+  SP       +A  L+ +Q  +   S    ++GLK  + ++IK  
Sbjct: 50  ALCVHSLSVYANDIQTSPKRLAETAIAVTLSRAQSTKLFVSRLTRMKGLKKREVEAIKDC 109

Query: 197 QHKLGDISVEMQREPEQFKVC 259
             ++ D    + +  ++ K+C
Sbjct: 110 VEEMNDTVDRLTKSVQELKLC 130


>At5g37630.1 68418.m04532 chromosome condensation family protein
           contains pfam profile: PF04154 chromosome condensation
           protein 3, C-terminal region
          Length = 1051

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +2

Query: 2   GIRXREDAILAEGIENLCNDLNLSPDDFKVLILAWKLNASQMCRFTKSEFVQGLKNMKTD 181
           GI    D   AE +  L   ++ +P +++ +IL      ++ CR   ++F+Q +  +   
Sbjct: 488 GINLGGDKDWAEAVSKLAKKVHAAPGEYEEVILVVVEEVARPCRERTADFLQWMHMLSLT 547

Query: 182 SI 187
           S+
Sbjct: 548 SL 549


>At3g43610.1 68416.m04640 tubulin family protein
          Length = 1120

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 173 KTDSIKGIQHKLGDISVEMQREPEQFKVCIDLPLSLG 283
           + D  + +Q KLGD S + +  P Q    I LP+S G
Sbjct: 430 RDDYYRMMQEKLGDFSEKFEVFPGQVPGAISLPISYG 466


>At2g38500.1 68415.m04730 expressed protein
          Length = 356

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 149 FVQGLKNMKTDSIKGIQHKLGDISVEMQREPEQFKV 256
           F Q ++N+  D ++ I  KLG I VE  R P   K+
Sbjct: 169 FSQEMENV-ADKLEDIARKLGQIMVENSRRPNDKKI 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,995
Number of Sequences: 28952
Number of extensions: 314686
Number of successful extensions: 736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)