BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0950 (852 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 36 0.010 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.12 SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 31 0.21 SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 29 0.63 SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 29 0.84 SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 29 0.84 SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 29 0.84 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 1.1 SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.9 SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 28 1.9 SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 3.4 SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 3.4 SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.5 SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 4.5 SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.9 SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9 SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 26 7.8 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 35.5 bits (78), Expect = 0.010 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +1 Query: 136 PYSESEHSASSCFTSSGSMYDAANE-SVTLQLAEFVSNSPTHNPCRSPVP 282 P S S HS+ TSS S+Y N+ S++ ++ SPT +P R+P P Sbjct: 177 PSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSP 226 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 31.9 bits (69), Expect = 0.12 Identities = 48/187 (25%), Positives = 77/187 (41%) Frame = +1 Query: 43 PHLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTL 222 P TNSY+SPV P+ S S + S + SE++ SS T S S+ D ++ S + Sbjct: 93 PSETNSYSSPVSSYSDPATSQLPSSTSFFSP--TSSEYTPSS--TESSSLLDPSSVSSAI 148 Query: 223 QLAEFVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWPGVDESRSMWLSSRMTDTGR 402 + S S + S + D P F L S S SS + Sbjct: 149 LPS---STSVEVSISSSSLSSSD---PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202 Query: 403 DSEKVSRS*VRWLNAARRVRH*TSPSSYKYHIAPASSMASGTCLCTP*TTTVSQRAASLS 582 S S +L+++ V +SPSS +SS+++ + T +++ + + S S Sbjct: 203 TSTSSS-----YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS 257 Query: 583 GRRSWAS 603 S AS Sbjct: 258 SSSSTAS 264 Score = 31.9 bits (69), Expect = 0.12 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +1 Query: 52 TNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSA--SSCFTSSGSMYDAANESVTLQ 225 ++S++S V + S+ST S S+P S S HS+ SS +SS S +A S Sbjct: 365 SSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFY 424 Query: 226 LAEFVSNSPTHNPCRS 273 S S +H+ S Sbjct: 425 HNSTSSRSSSHSSSHS 440 >SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 166 Score = 31.1 bits (67), Expect = 0.21 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = +1 Query: 85 VTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSM-YDAANESVTLQLAEFVSNSPTHN 261 ++P TK + ES +S S + S+ + ++ V LQL E V+ P Sbjct: 23 ISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTSDGVLLQLPETVTPLPRAK 82 Query: 262 PCRSPVPEPDW 294 P P PE W Sbjct: 83 PLPKPKPETKW 93 >SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizosaccharomyces pombe|chr 2|||Manual Length = 785 Score = 29.5 bits (63), Expect = 0.63 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Frame = +1 Query: 67 SPVDHQVTPSASTKGQSDDYESKPY--SESEHSASSCFTSSGSMYDAANESVTLQLAEFV 240 SP++ + S STK ++D + Y S S+ S S + + EF Sbjct: 8 SPIEEHMNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFE 67 Query: 241 SNSPTHNPCRSPVP---EPDWPC 300 +SP + R+ VP +P PC Sbjct: 68 EDSP-YPEVRAAVPPTDDPSMPC 89 >SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|||Manual Length = 1369 Score = 29.1 bits (62), Expect = 0.84 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 6/97 (6%) Frame = +1 Query: 19 DTEHHYDVPHLTNSYASPVDHQVT--PSASTKGQSDDYESKPYS--ESEHS-ASSCFTSS 183 D E H P VDH + P K S+ P + EH+ SS T+S Sbjct: 36 DAEDH--TPSKITDLEKNVDHSIPSFPENDPKNYSEFVNLNPPKRPDLEHTRGSSWHTAS 93 Query: 184 GSMYD-AANESVTLQLAEFVSNSPTHNPCRSPVPEPD 291 ++ D AAN+S +Q EF++ + P E D Sbjct: 94 ENVNDLAANDSTRVQTPEFITQTMEDENVEVPPLERD 130 >SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 305 Score = 29.1 bits (62), Expect = 0.84 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Frame = +1 Query: 124 YESKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSN--SPTHNPCRSPVP 282 ++ P E EH + F+S YD N++++L + N NP S VP Sbjct: 53 FKDVPEDEKEHLVKNVFSSVAKKYDEMNDAMSLGIHRLWKNIFVSRLNPGNSTVP 107 >SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces pombe|chr 3|||Manual Length = 920 Score = 29.1 bits (62), Expect = 0.84 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +1 Query: 46 HLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQ 225 HL +S++S Q +P + S + SE E S S+G+M ++ + +L+ Sbjct: 91 HLDSSFSS----QHSPDNRKRMSSTSVFKRINSEEEGRIPSLTYSAGTMNSTSSSTASLK 146 Query: 226 LAEFVSNSPTHNP 264 A+ V++ T NP Sbjct: 147 GADIVADYETFNP 159 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 28.7 bits (61), Expect = 1.1 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = +1 Query: 130 SKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNPCRSPV 279 S PYS S SAS+ SS + ++ +E VS+ PT +P SPV Sbjct: 315 SYPYSSSRPSASASLASSPTRSAFRPKTSETVSSEVVSSPPT-SPLHSPV 363 >SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 262 Score = 27.9 bits (59), Expect = 1.9 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = +1 Query: 52 TNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQLA 231 ++S A+P T S+S+ S S S SASS +SS + + S + Sbjct: 143 SSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTV 202 Query: 232 EFVSNS 249 SNS Sbjct: 203 SASSNS 208 >SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 595 Score = 27.9 bits (59), Expect = 1.9 Identities = 12/37 (32%), Positives = 16/37 (43%) Frame = +1 Query: 235 FVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWP 345 F + PT VP+ DW W F+F+ WP Sbjct: 155 FPHSFPTWKSAFRDVPDKDWAKTCLDWYFRFINCNWP 191 >SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 27.1 bits (57), Expect = 3.4 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = +3 Query: 669 DMLSTFVLVGESFNG 713 DMLSTF L GES NG Sbjct: 669 DMLSTFKLTGESSNG 683 >SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces pombe|chr 2|||Manual Length = 987 Score = 27.1 bits (57), Expect = 3.4 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -3 Query: 598 PTIFFH*DWPPSGLLLWSMAYRDRFQKPCL-RLAQC 494 P F W +GL S AYR R +PCL L +C Sbjct: 347 PNTPFGGKWTNNGLSAVSSAYRTRLLEPCLPELDKC 382 >SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 682 Score = 26.6 bits (56), Expect = 4.5 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +1 Query: 55 NSYASPVDHQVTPSASTKGQSDDYESKPYSESEHS-ASSCFTSSGSMYDAANESV 216 NSY +H +PS ++ D S P S S S A + S S Y + N+S+ Sbjct: 370 NSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPSMAHANGASFASQYPSLNKSI 424 >SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 26.6 bits (56), Expect = 4.5 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Frame = +1 Query: 1 RXXRNSDTEHHYDVPHLTNSYASPVDHQVTPSASTKGQSDDYES----KPYSESEHSASS 168 R R T H H T+S S D + S+S++ SD S K YS+S S++ Sbjct: 66 RSLRRGHTSGHAS-EH-TSSSRSSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSAR 123 Query: 169 CFTSSG--SMYD 198 ++SG S+YD Sbjct: 124 SSSTSGSISLYD 135 >SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 243 Score = 26.2 bits (55), Expect = 5.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 458 TRRAAFNHRTQLRDTFSESRPVSVILDDS 372 +R + F+HR+ RD+FS +R S L S Sbjct: 65 SRSSNFSHRSSSRDSFSSNRSYSSSLSRS 93 >SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1379 Score = 26.2 bits (55), Expect = 5.9 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = +1 Query: 139 YSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNPCRSPVPE 285 Y + + +S+ +SSG + A+ ++ L + S SP+ +P +P E Sbjct: 174 YHKFKPLSSNSLSSSGMHFSASKQAFNSPLLQTFSPSPSVSPFSNPAVE 222 >SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 25.8 bits (54), Expect = 7.8 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 464 IKQVRRLTNTTLRQPQAWLLEPVSVRHRPQQ 556 + Q +LT +LR+ W++E + + RPQ+ Sbjct: 160 LHQPSKLTQNSLREMTVWVMETMRLFLRPQK 190 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,598,255 Number of Sequences: 5004 Number of extensions: 76015 Number of successful extensions: 262 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 261 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 422462090 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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