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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0950
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    36   0.010
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.12 
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    31   0.21 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    29   0.63 
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    29   0.84 
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    29   0.84 
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    29   0.84 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   1.1  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    28   1.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   3.4  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.5  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    27   4.5  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   7.8  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 136 PYSESEHSASSCFTSSGSMYDAANE-SVTLQLAEFVSNSPTHNPCRSPVP 282
           P S S HS+    TSS S+Y   N+ S++     ++  SPT +P R+P P
Sbjct: 177 PSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSP 226


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 48/187 (25%), Positives = 77/187 (41%)
 Frame = +1

Query: 43  PHLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTL 222
           P  TNSY+SPV     P+ S    S  + S   + SE++ SS  T S S+ D ++ S  +
Sbjct: 93  PSETNSYSSPVSSYSDPATSQLPSSTSFFSP--TSSEYTPSS--TESSSLLDPSSVSSAI 148

Query: 223 QLAEFVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWPGVDESRSMWLSSRMTDTGR 402
             +   S S   +   S +   D   P     F  L         S S   SS  +    
Sbjct: 149 LPS---STSVEVSISSSSLSSSD---PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202

Query: 403 DSEKVSRS*VRWLNAARRVRH*TSPSSYKYHIAPASSMASGTCLCTP*TTTVSQRAASLS 582
            S   S     +L+++  V   +SPSS       +SS+++ +   T  +++ +  + S S
Sbjct: 203 TSTSSS-----YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS 257

Query: 583 GRRSWAS 603
              S AS
Sbjct: 258 SSSSTAS 264



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 52  TNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSA--SSCFTSSGSMYDAANESVTLQ 225
           ++S++S V    + S+ST   S    S+P S S HS+  SS  +SS S   +A  S    
Sbjct: 365 SSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFY 424

Query: 226 LAEFVSNSPTHNPCRS 273
                S S +H+   S
Sbjct: 425 HNSTSSRSSSHSSSHS 440


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +1

Query: 85  VTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSM-YDAANESVTLQLAEFVSNSPTHN 261
           ++P   TK    + ES  +S S  +         S+  +  ++ V LQL E V+  P   
Sbjct: 23  ISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTSDGVLLQLPETVTPLPRAK 82

Query: 262 PCRSPVPEPDW 294
           P   P PE  W
Sbjct: 83  PLPKPKPETKW 93


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +1

Query: 67  SPVDHQVTPSASTKGQSDDYESKPY--SESEHSASSCFTSSGSMYDAANESVTLQLAEFV 240
           SP++  +  S STK ++D  +   Y  S S+ S S         +          + EF 
Sbjct: 8   SPIEEHMNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFE 67

Query: 241 SNSPTHNPCRSPVP---EPDWPC 300
            +SP +   R+ VP   +P  PC
Sbjct: 68  EDSP-YPEVRAAVPPTDDPSMPC 89


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
 Frame = +1

Query: 19  DTEHHYDVPHLTNSYASPVDHQVT--PSASTKGQSDDYESKPYS--ESEHS-ASSCFTSS 183
           D E H   P         VDH +   P    K  S+     P    + EH+  SS  T+S
Sbjct: 36  DAEDH--TPSKITDLEKNVDHSIPSFPENDPKNYSEFVNLNPPKRPDLEHTRGSSWHTAS 93

Query: 184 GSMYD-AANESVTLQLAEFVSNSPTHNPCRSPVPEPD 291
            ++ D AAN+S  +Q  EF++ +        P  E D
Sbjct: 94  ENVNDLAANDSTRVQTPEFITQTMEDENVEVPPLERD 130


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 124 YESKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSN--SPTHNPCRSPVP 282
           ++  P  E EH   + F+S    YD  N++++L +     N      NP  S VP
Sbjct: 53  FKDVPEDEKEHLVKNVFSSVAKKYDEMNDAMSLGIHRLWKNIFVSRLNPGNSTVP 107


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 46  HLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQ 225
           HL +S++S    Q +P    +  S     +  SE E    S   S+G+M   ++ + +L+
Sbjct: 91  HLDSSFSS----QHSPDNRKRMSSTSVFKRINSEEEGRIPSLTYSAGTMNSTSSSTASLK 146

Query: 226 LAEFVSNSPTHNP 264
            A+ V++  T NP
Sbjct: 147 GADIVADYETFNP 159


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 130 SKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNPCRSPV 279
           S PYS S  SAS+   SS +      ++     +E VS+ PT +P  SPV
Sbjct: 315 SYPYSSSRPSASASLASSPTRSAFRPKTSETVSSEVVSSPPT-SPLHSPV 363


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 52  TNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQLA 231
           ++S A+P     T S+S+   S    S   S    SASS  +SS +    +  S   +  
Sbjct: 143 SSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTV 202

Query: 232 EFVSNS 249
              SNS
Sbjct: 203 SASSNS 208


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 235 FVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWP 345
           F  + PT       VP+ DW      W F+F+   WP
Sbjct: 155 FPHSFPTWKSAFRDVPDKDWAKTCLDWYFRFINCNWP 191


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +3

Query: 669 DMLSTFVLVGESFNG 713
           DMLSTF L GES NG
Sbjct: 669 DMLSTFKLTGESSNG 683


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 598 PTIFFH*DWPPSGLLLWSMAYRDRFQKPCL-RLAQC 494
           P   F   W  +GL   S AYR R  +PCL  L +C
Sbjct: 347 PNTPFGGKWTNNGLSAVSSAYRTRLLEPCLPELDKC 382


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 55  NSYASPVDHQVTPSASTKGQSDDYESKPYSESEHS-ASSCFTSSGSMYDAANESV 216
           NSY    +H  +PS ++     D  S P S S  S A +   S  S Y + N+S+
Sbjct: 370 NSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPSMAHANGASFASQYPSLNKSI 424


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +1

Query: 1   RXXRNSDTEHHYDVPHLTNSYASPVDHQVTPSASTKGQSDDYES----KPYSESEHSASS 168
           R  R   T  H    H T+S  S  D   + S+S++  SD   S    K YS+S  S++ 
Sbjct: 66  RSLRRGHTSGHAS-EH-TSSSRSSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSAR 123

Query: 169 CFTSSG--SMYD 198
             ++SG  S+YD
Sbjct: 124 SSSTSGSISLYD 135


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 458 TRRAAFNHRTQLRDTFSESRPVSVILDDS 372
           +R + F+HR+  RD+FS +R  S  L  S
Sbjct: 65  SRSSNFSHRSSSRDSFSSNRSYSSSLSRS 93


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 139 YSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNPCRSPVPE 285
           Y + +  +S+  +SSG  + A+ ++    L +  S SP+ +P  +P  E
Sbjct: 174 YHKFKPLSSNSLSSSGMHFSASKQAFNSPLLQTFSPSPSVSPFSNPAVE 222


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 464 IKQVRRLTNTTLRQPQAWLLEPVSVRHRPQQ 556
           + Q  +LT  +LR+   W++E + +  RPQ+
Sbjct: 160 LHQPSKLTQNSLREMTVWVMETMRLFLRPQK 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,598,255
Number of Sequences: 5004
Number of extensions: 76015
Number of successful extensions: 262
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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