Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0950
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 36 0.010
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.12
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 31 0.21
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 29 0.63
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 29 0.84
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 29 0.84
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 29 0.84
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 1.1
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.9
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 28 1.9
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 3.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 3.4
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 4.5
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.9
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 26 7.8
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 136 PYSESEHSASSCFTSSGSMYDAANE-SVTLQLAEFVSNSPTHNPCRSPVP 282
P S S HS+ TSS S+Y N+ S++ ++ SPT +P R+P P
Sbjct: 177 PSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSP 226
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.9 bits (69), Expect = 0.12
Identities = 48/187 (25%), Positives = 77/187 (41%)
Frame = +1
Query: 43 PHLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTL 222
P TNSY+SPV P+ S S + S + SE++ SS T S S+ D ++ S +
Sbjct: 93 PSETNSYSSPVSSYSDPATSQLPSSTSFFSP--TSSEYTPSS--TESSSLLDPSSVSSAI 148
Query: 223 QLAEFVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWPGVDESRSMWLSSRMTDTGR 402
+ S S + S + D P F L S S SS +
Sbjct: 149 LPS---STSVEVSISSSSLSSSD---PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
Query: 403 DSEKVSRS*VRWLNAARRVRH*TSPSSYKYHIAPASSMASGTCLCTP*TTTVSQRAASLS 582
S S +L+++ V +SPSS +SS+++ + T +++ + + S S
Sbjct: 203 TSTSSS-----YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS 257
Query: 583 GRRSWAS 603
S AS
Sbjct: 258 SSSSTAS 264
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 52 TNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSA--SSCFTSSGSMYDAANESVTLQ 225
++S++S V + S+ST S S+P S S HS+ SS +SS S +A S
Sbjct: 365 SSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFY 424
Query: 226 LAEFVSNSPTHNPCRS 273
S S +H+ S
Sbjct: 425 HNSTSSRSSSHSSSHS 440
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.1 bits (67), Expect = 0.21
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 85 VTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSM-YDAANESVTLQLAEFVSNSPTHN 261
++P TK + ES +S S + S+ + ++ V LQL E V+ P
Sbjct: 23 ISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTSDGVLLQLPETVTPLPRAK 82
Query: 262 PCRSPVPEPDW 294
P P PE W
Sbjct: 83 PLPKPKPETKW 93
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 29.5 bits (63), Expect = 0.63
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = +1
Query: 67 SPVDHQVTPSASTKGQSDDYESKPY--SESEHSASSCFTSSGSMYDAANESVTLQLAEFV 240
SP++ + S STK ++D + Y S S+ S S + + EF
Sbjct: 8 SPIEEHMNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFE 67
Query: 241 SNSPTHNPCRSPVP---EPDWPC 300
+SP + R+ VP +P PC
Sbjct: 68 EDSP-YPEVRAAVPPTDDPSMPC 89
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 29.1 bits (62), Expect = 0.84
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Frame = +1
Query: 19 DTEHHYDVPHLTNSYASPVDHQVT--PSASTKGQSDDYESKPYS--ESEHS-ASSCFTSS 183
D E H P VDH + P K S+ P + EH+ SS T+S
Sbjct: 36 DAEDH--TPSKITDLEKNVDHSIPSFPENDPKNYSEFVNLNPPKRPDLEHTRGSSWHTAS 93
Query: 184 GSMYD-AANESVTLQLAEFVSNSPTHNPCRSPVPEPD 291
++ D AAN+S +Q EF++ + P E D
Sbjct: 94 ENVNDLAANDSTRVQTPEFITQTMEDENVEVPPLERD 130
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 124 YESKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSN--SPTHNPCRSPVP 282
++ P E EH + F+S YD N++++L + N NP S VP
Sbjct: 53 FKDVPEDEKEHLVKNVFSSVAKKYDEMNDAMSLGIHRLWKNIFVSRLNPGNSTVP 107
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 29.1 bits (62), Expect = 0.84
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +1
Query: 46 HLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQ 225
HL +S++S Q +P + S + SE E S S+G+M ++ + +L+
Sbjct: 91 HLDSSFSS----QHSPDNRKRMSSTSVFKRINSEEEGRIPSLTYSAGTMNSTSSSTASLK 146
Query: 226 LAEFVSNSPTHNP 264
A+ V++ T NP
Sbjct: 147 GADIVADYETFNP 159
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 130 SKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNPCRSPV 279
S PYS S SAS+ SS + ++ +E VS+ PT +P SPV
Sbjct: 315 SYPYSSSRPSASASLASSPTRSAFRPKTSETVSSEVVSSPPT-SPLHSPV 363
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 52 TNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQLA 231
++S A+P T S+S+ S S S SASS +SS + + S +
Sbjct: 143 SSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTV 202
Query: 232 EFVSNS 249
SNS
Sbjct: 203 SASSNS 208
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 235 FVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWP 345
F + PT VP+ DW W F+F+ WP
Sbjct: 155 FPHSFPTWKSAFRDVPDKDWAKTCLDWYFRFINCNWP 191
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 669 DMLSTFVLVGESFNG 713
DMLSTF L GES NG
Sbjct: 669 DMLSTFKLTGESSNG 683
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 598 PTIFFH*DWPPSGLLLWSMAYRDRFQKPCL-RLAQC 494
P F W +GL S AYR R +PCL L +C
Sbjct: 347 PNTPFGGKWTNNGLSAVSSAYRTRLLEPCLPELDKC 382
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 55 NSYASPVDHQVTPSASTKGQSDDYESKPYSESEHS-ASSCFTSSGSMYDAANESV 216
NSY +H +PS ++ D S P S S S A + S S Y + N+S+
Sbjct: 370 NSYTPHSNHLHSPSPNSNSGPTDSLSAPNSTSSPSMAHANGASFASQYPSLNKSI 424
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 4.5
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +1
Query: 1 RXXRNSDTEHHYDVPHLTNSYASPVDHQVTPSASTKGQSDDYES----KPYSESEHSASS 168
R R T H H T+S S D + S+S++ SD S K YS+S S++
Sbjct: 66 RSLRRGHTSGHAS-EH-TSSSRSSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSAR 123
Query: 169 CFTSSG--SMYD 198
++SG S+YD
Sbjct: 124 SSSTSGSISLYD 135
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 458 TRRAAFNHRTQLRDTFSESRPVSVILDDS 372
+R + F+HR+ RD+FS +R S L S
Sbjct: 65 SRSSNFSHRSSSRDSFSSNRSYSSSLSRS 93
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 139 YSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNPCRSPVPE 285
Y + + +S+ +SSG + A+ ++ L + S SP+ +P +P E
Sbjct: 174 YHKFKPLSSNSLSSSGMHFSASKQAFNSPLLQTFSPSPSVSPFSNPAVE 222
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 464 IKQVRRLTNTTLRQPQAWLLEPVSVRHRPQQ 556
+ Q +LT +LR+ W++E + + RPQ+
Sbjct: 160 LHQPSKLTQNSLREMTVWVMETMRLFLRPQK 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,598,255
Number of Sequences: 5004
Number of extensions: 76015
Number of successful extensions: 262
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -