Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0950
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588... 35 0.095
09_01_0116 - 1797740-1797788,1798087-1798166,1798245-1798424,179... 29 3.6
04_03_0818 + 20014685-20014687,20014792-20014831,20014988-200150... 29 4.7
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508... 29 6.2
11_03_0058 - 9380926-9381062,9382003-9382413,9382561-9382786 28 8.2
09_03_0139 + 12692844-12694982 28 8.2
07_03_0600 + 19866757-19867218,19867920-19868429 28 8.2
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 28 8.2
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724 28 8.2
04_04_1287 - 32390422-32391588,32392472-32392645 28 8.2
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500... 28 8.2
>03_02_0142 +
5877480-5879663,5879783-5879898,5880749-5882419,
5882570-5882618,5882703-5882941,5883073-5883174,
5883634-5883862
Length = 1529
Score = 34.7 bits (76), Expect = 0.095
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 513 HGFWNLSLYAIDHNSKPEGG--QSQWKKIVGLGQEXINTP 626
HGFW +IDHN E G Q+ WK L Q+ +TP
Sbjct: 480 HGFWMSQQNSIDHNISRESGSTQNDWKSKAPLVQDINSTP 519
>09_01_0116 -
1797740-1797788,1798087-1798166,1798245-1798424,
1799223-1799324,1801026-1801178,1801804-1801932,
1802791-1802930,1803941-1804066,1805792-1805963
Length = 376
Score = 29.5 bits (63), Expect = 3.6
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Frame = +1
Query: 40 VPHLTNSYASPVDHQVTP--SASTKGQSDD-YESKPYSESEHSASSCFTSSGSMYDAA-- 204
+ H+ N P D+ ++ SA K Q+ + +E Y+ + ++ S S +D A
Sbjct: 229 ISHVENFGLKPRDNDLSKRKSAELKLQAREAFERNDYALAVQHYTNAIELSTSAHDKATL 288
Query: 205 --NESVT-LQLAEFVSNSPTHNPCRSPVPEPDWP--CPQRGWPFQFLKE 336
N S+ L+L+ + N CR + P WP C ++G F F+K+
Sbjct: 289 LANRSLCWLRLSTGIGAIADANMCR--MLRPSWPKACYRQGAAFMFIKD 335
>04_03_0818 +
20014685-20014687,20014792-20014831,20014988-20015025,
20015359-20015485,20015571-20015797,20015919-20016064,
20016166-20016284,20016711-20016799,20016881-20017003,
20017123-20017158,20017464-20017562,20017642-20017833
Length = 412
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 73 VDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGS 189
++H+V + + G + Y+ P S EH+ +SC G+
Sbjct: 109 INHRVGTTQGSNGMYNRYDGIPVSWDEHAVTSCSGGKGN 147
>09_02_0157 +
5083771-5083996,5084007-5084326,5085958-5086392,
5087277-5087921
Length = 541
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 336 LLQELKGPPPLRARPVWLRHWRPTWIVSGRIGDELCQLEC 217
LL E KG P + R +W +HW V E +L+C
Sbjct: 502 LLPETKGLPIEQVRRLWAQHWFWRRFVDTASNGEQAKLDC 541
>11_03_0058 - 9380926-9381062,9382003-9382413,9382561-9382786
Length = 257
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 76 DHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPT 255
D +V A Q DDY + ++ +A++CF +S S+ E + +A FV +
Sbjct: 176 DVEVESEAEADDQGDDYLGEDAMDT--NATACFATSESLAGIYGEGCSRVVAGFVLSVLK 233
Query: 256 HNPC 267
N C
Sbjct: 234 ANGC 237
>09_03_0139 + 12692844-12694982
Length = 712
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +3
Query: 273 SSAGARLALPAAGVALSVPEGALARGRREQIYVAVVKDDRYRPRLGKGITQLSPVVKCG 449
S A A ALP + SV G LAR EQ + A V+ D R + + + K G
Sbjct: 140 SVAAAMDALPRSVAEASVEAGELARVVSEQAWRAAVRPDGADERAARSVRSILDQFKDG 198
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 295 PCPQRGWPFQFLKEPWPGVDESRSMWL 375
P PQ+ + Q P PG DE RS+W+
Sbjct: 106 PPPQQQYGAQMAGGPAPGGDEIRSLWI 132
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -3
Query: 832 PPQGVFXRTRYNLKAIIPELGFR*ARSGRRIANCSAFTALPLKLSPTNTNVDNMSVTRN 656
PP+ RT+ +LK+IIP+ FR ARS + + A +P +P+ DN S R+
Sbjct: 70 PPRPNSTRTKSSLKSIIPQQSFR-ARSSAQEGD-RAILLVP--GTPSEGQQDNTSTLRS 124
>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
Length = 353
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 73 VDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSS 183
+ QV S+S G DD SKP E +ASSC T +
Sbjct: 143 IKEQVRQSSSG-GVGDDDASKPRCNLESAASSCLTDT 178
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/93 (22%), Positives = 39/93 (41%)
Frame = +1
Query: 10 RNSDTEHHYDVPHLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGS 189
+ SDT + TN+ + D V +++ G S E ++ S S+ S+G+
Sbjct: 160 KKSDTNISESILVGTNNENTTSDTAVPENSANPGDSAPAEEHHSYDNSASESNQDESTGA 219
Query: 190 MYDAANESVTLQLAEFVSNSPTHNPCRSPVPEP 288
+ N +V + + +NS P + P P
Sbjct: 220 STNNENATVDTVVVDKYANSSDSTPATTEEPHP 252
>02_04_0540 +
23748610-23748930,23749054-23749157,23749889-23750063,
23750149-23750212,23750867-23750946,23751128-23751287,
23751415-23751476,23751607-23751666,23751824-23751882,
23752194-23752275,23752691-23752740,23752847-23752980,
23753508-23753590,23754070-23754142,23754461-23754477
Length = 507
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 107 RDRATIMKANRTANQNIQPLVVSRAP 184
+DR ++M + +TANQ+I P V+ AP
Sbjct: 258 KDRVSLMTSLQTANQSIPPPPVAAAP 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,825,204
Number of Sequences: 37544
Number of extensions: 616818
Number of successful extensions: 2163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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