Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0950
(852 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 42 6e-04
SB_45174| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_4779| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 31 1.6
SB_27949| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_56875| Best HMM Match : LON (HMM E-Value=0) 29 6.3
SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 29 6.3
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 41.9 bits (94), Expect = 6e-04
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Frame = +3
Query: 222 PTGRVRLQFAHSQSMSVSSAGARLALPAAGVALSVPEGALARGRREQIY----VAVVKDD 389
PT + V+ G L P AGV L +P G ++Y + V D
Sbjct: 369 PTADYHCEPLQDHPSFVTGEGNVLWFPTAGVKLHLPHEFYGEGVDNEVYGKIKIGVHHDR 428
Query: 390 RYRPRLGKGITQLSPVVKCGPPRQTLNKSVVLQIPHCASL-KHGFWNLS-LYAIDHNSKP 563
P L + LSP ++ P L + + ++IPH A L W+L L D + P
Sbjct: 429 PSLPTLNEHEVLLSPAIRIRPDGAELQEPITIEIPHTADLGTDNQWSLRVLTCYDTQAGP 488
Query: 564 E 566
E
Sbjct: 489 E 489
>SB_45174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 31.5 bits (68), Expect = 0.90
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Frame = -3
Query: 571 PPSGLLLWSMAYRDRFQKPCLRLAQCGICKTTDLFNV*RGGPHLTTGLS-CVIPFPSRGL 395
P +GL++ S+ R F KP L C + KT L+ +S C +P+ S G
Sbjct: 11 PATGLIVESVVSRPEFSKPRFVLVFCSVSKTI-----------LSQSVSLCALPWLSSGQ 59
Query: 394 YLSSLTT---AT*ICSRLPLARAPSGTERATPAAGKASLAPALETDMDCE------WANW 242
S+ T AT I R+P A + AG ++ PA E M C+ W +
Sbjct: 60 KPDSVATESQATAI-GRVPFAIQAAQLLGRAIGAGLFAITPAGERGMCCKAIKLVTWPSG 118
Query: 241 RRTLPVGVS 215
LP+ VS
Sbjct: 119 TYGLPMPVS 127
>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 31.5 bits (68), Expect = 0.90
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 270 VSSAGARLALPAAGVALSVPEGALARGRREQIYVAVVKDDRYRPRLGKGITQLSPVVKCG 449
++ G L LP+ GV + P A+ + + V++ ++ P G + +S +V+ G
Sbjct: 858 LTKEGGTLDLPSFGVIFNFPPDAVTQSMEIE---CVIRPPQFTPS-ENGESVVSNIVELG 913
Query: 450 PPRQTLNKSVVLQIPHCA-SLKHGF 521
P L+KSV + + H +L+ G+
Sbjct: 914 PNSLVLSKSVHVTLRHSVLTLEPGY 938
>SB_4779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 274 PVPEPDWPCPQRGWPFQFLKEPWPGVDESRSMWLSSRMTDTGRDSEKVSRS-*VRWLN 444
P+PE + P P++ P + V +SR W + G + VSR RWLN
Sbjct: 116 PLPEQNVPTPRKRLPLRQAPAATRKVSDSRGRWAGRLVDVVGAGAGVVSRGLTARWLN 173
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 30.7 bits (66), Expect = 1.6
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 22 TEHHYDVPHLTNSYASPVDHQV--TPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMY 195
+E H +P + SP + + P+ Q+ + + P SE HS S F + S
Sbjct: 321 SEPHIKLPFSEAHFQSPTSNSLFQRPTFRAPHQTPFFRA-PLSEP-HSQSPTFRAPQSEP 378
Query: 196 DAANESVTLQLAEFVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWP 345
+ + +E S SPT R+P EP +P P PF L +P
Sbjct: 379 HFPAPTFRVPFSEPHSQSPTF---RAPQSEPHFPAPTFRVPFSELHIKFP 425
>SB_27949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 122 IMKANRTANQNIQPLVVSRAPVRCTTRPMNP*HSNWQSSS 241
I++ T N N+ P +R PV+ T P P HS S+S
Sbjct: 185 ILEEQTTLNSNLLPHGSNRLPVKNVTSPRTPSHSREGSAS 224
>SB_56875| Best HMM Match : LON (HMM E-Value=0)
Length = 925
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 781 PELGFR*ARSGRRIANCSAFTALPLKLSPTNTNVDNMSVT 662
PELG+ R R + A+ LSP +VD M VT
Sbjct: 569 PELGYSIFRKDRVLGGGGVLLAIKSTLSPIRCDVDTMRVT 608
>SB_41990| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 455
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 781 PELGFR*ARSGRRIANCSAFTALPLKLSPTNTNVDNMSVT 662
PELG+ R R + A+ LSP +VD M VT
Sbjct: 99 PELGYSIFRKDRVLGGGGVLLAIKSTLSPIRCDVDTMRVT 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,988,067
Number of Sequences: 59808
Number of extensions: 658573
Number of successful extensions: 1819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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