Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0950
(852 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63700.1 68414.m07209 protein kinase, putative contains prote... 31 0.74
At2g40475.1 68415.m04995 expressed protein 30 1.7
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 30 2.2
At2g46040.1 68415.m05727 ARID/BRIGHT DNA-binding domain-containi... 30 2.2
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 29 3.0
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen... 29 3.0
At3g46260.1 68416.m05007 protein kinase-related contains low sim... 29 3.9
At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s... 29 5.2
At3g16850.1 68416.m02151 glycoside hydrolase family 28 protein /... 29 5.2
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 5.2
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 5.2
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 28 6.9
At3g24520.1 68416.m03079 heat shock transcription factor family ... 28 9.1
At1g11170.1 68414.m01280 expressed protein contains Pfam profile... 28 9.1
>At1g63700.1 68414.m07209 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to MEK kinase
(MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
Length = 883
Score = 31.5 bits (68), Expect = 0.74
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 130 SKPYSESEHSASSCFTSSGSMYDAANESVTLQLAE--FVSNSPTHNPCRSPVPEPDWPCP 303
SKPYS+ S +S GS Y++ N S+ +A F S C SPVP P P
Sbjct: 260 SKPYSDVSLLGSGQCSSPGSGYNSGNNSIGGDMATQLFWPQSRCSPEC-SPVPSPRMTSP 318
>At2g40475.1 68415.m04995 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +1
Query: 94 SASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNPC 267
SAS+ S S P S+ EH C++ S S +E E VS+SPT C
Sbjct: 110 SASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKEDDEE------EIVSSSPTSTLC 161
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.9 bits (64), Expect = 2.2
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = +1
Query: 43 PHLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEH-SASSCFTSSGSMYDAANESV- 216
P L+ S+A+ TPS S K S S +S + S S T S S A + S
Sbjct: 192 PALSPSHATS-HSPATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPA 250
Query: 217 ---TLQLAEFVSNSPTHNPCRSPVPEPDWPCPQRGWPFQFLKEPWPGVDESRS 366
+ A S+SP H+P SP P P P P Q P P +S S
Sbjct: 251 HAPSHSPAHAPSHSPAHSPSHSPA-TPKSPSPSSS-PAQSPATPSPMTPQSPS 301
>At2g46040.1 68415.m05727 ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein contains Pfam
profiles PF01388: ARID/BRIGHT DNA binding domain,
PF01448: ELM2 domain
Length = 562
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 283 EPDWPCPQRGWPFQFLKEPWPGV-DESRSMWLSSRMTDTGRDSEKVS 420
E D PC G FQ W G+ ES S WL +R+ ++ K +
Sbjct: 354 EEDRPCALVGSKFQAKVPEWTGITPESDSKWLGTRIWPLTKEQTKAN 400
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 31 HYDVPHLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAA 204
H D P S ++ VTP+ G + ES PYSES + FT+ G+M AA
Sbjct: 187 HDDSPVYMYSMGGMAEYCVTPA---HGLAPLPESLPYSESAILGCAVFTAYGAMAHAA 241
>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 31 HYDVPHLTNSYASPVDHQVTPSASTKGQSDDYESKPYSESEHSASSCFTSSGSMYDAA 204
H D P S ++ VTP+ G + ES PYSES + FT+ G+M AA
Sbjct: 187 HDDSPVYMYSMGGMAEYCVTPA---HGLAPLPESLPYSESAILGCAVFTAYGAMAHAA 241
>At3g46260.1 68416.m05007 protein kinase-related contains low
similarity to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 434
Score = 29.1 bits (62), Expect = 3.9
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = -2
Query: 443 FNHRTQ--LRDTF--SESRPVSVILDDSHIDLLSSTPGQGSFRN*KGHPRCGQGQSGSGT 276
F TQ LRD SES+ V DDS + + S S N K H G GQSGS
Sbjct: 313 FGKATQVVLRDIMASSESQLVFKSTDDSGLPTIISGLEVYSISNYKDHGSGGGGQSGSSN 372
Query: 275 GDRHGL*VGELETNS-ASWSV 216
+ L + + N+ SWS+
Sbjct: 373 NGKFLLNLCKCFINNFFSWSI 393
>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
similar to SP|P54278 PMS1 protein homolog 2 (DNA
mismatch repair protein PMS2) {Homo sapiens}; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA
gyrase B-, and HSP90-like domain protein, PF01119: DNA
mismatch repair protein, C-terminal domain
Length = 923
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 416 TFSESRPVSV-ILDDSHIDLLSSTPGQGSFRN 324
TF+ +PVS+ + +D ++ S PGQG+ RN
Sbjct: 237 TFTSLQPVSICVSEDCRVEGFLSKPGQGTGRN 268
>At3g16850.1 68416.m02151 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to SP|P05117 Polygalacturonase 2A precursor
(EC 3.2.1.15) (Pectinase) {Lycopersicon esculentum};
contains PF00295: Glycosyl hydrolases family 28
Length = 455
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 97 ASTKGQSDDYESKPYSESEHSASSCFTSSGSMYD 198
++ G SDD +P E S SSCF + GS+Y+
Sbjct: 412 SNVSGFSDDVSPEPCQELMSSPSSCF-AGGSIYE 444
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 124 YESKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNP--CRSPVPEPDWP 297
Y ++ ++ + SS F+S+ + + + T LAEF N ++ RSP PE + P
Sbjct: 395 YAARNPGANKAAPSSSFSSASATNNTGYD--TAGLAEFYGNGAVYSDPTWRSPTPETEGP 452
Query: 298 CP 303
P
Sbjct: 453 AP 454
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 124 YESKPYSESEHSASSCFTSSGSMYDAANESVTLQLAEFVSNSPTHNP--CRSPVPEPDWP 297
Y ++ ++ + SS F+S+ + + + T LAEF N ++ RSP PE + P
Sbjct: 395 YAARNPGANKAAPSSSFSSASATNNTGYD--TAGLAEFYGNGAVYSDPTWRSPTPETEGP 452
Query: 298 CP 303
P
Sbjct: 453 AP 454
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 18 GHRTSL*CATSNEQLRF--TCGPPSDSICLY 104
G R L A +N+ ++F TC P +++CLY
Sbjct: 21 GRRAGLIKALTNDMVKFYQTCDPEKENLCLY 51
>At3g24520.1 68416.m03079 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 330
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 716 GRKXTTISDSTPRPCLTETQFRNYS 790
GR +S STP P TE +RN+S
Sbjct: 213 GRVFRVMSSSTPSPSSTENLYRNHS 237
>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 438
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 304 QRGWPFQFLKEPWPGVDESRSMWL--SSRMTDTGRDSEKVSRS*VRWLNAARRVRH 465
Q W Q KE W E W+ SS + T R S +R R +++ RV+H
Sbjct: 369 QSTWELQTFKERWSKAVEEDIKWIDPSSSSSMTKRKSNGNNRRLRRGSSSSHRVKH 424
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,673,167
Number of Sequences: 28952
Number of extensions: 442203
Number of successful extensions: 1452
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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