BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0949 (837 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 83 6e-17 SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 35 0.012 SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 32 0.12 SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 30 0.47 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.62 SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.82 SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 29 1.1 SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 28 1.4 SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 4.4 SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 27 4.4 SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 7.6 SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 26 7.6 SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 7.6 >SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 404 Score = 82.6 bits (195), Expect = 6e-17 Identities = 34/63 (53%), Positives = 43/63 (68%) Frame = +2 Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVA*RRGSKTQ 685 SG C+YG KCQFAHG +EL+ RHPKYK+E CR+F G+CPYG RC F+ ++ Sbjct: 338 SGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFLHDESNAQKS 397 Query: 686 RTI 694 TI Sbjct: 398 ATI 400 Score = 31.1 bits (67), Expect = 0.20 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 587 YKTELCRTFHSVGFCPYGPRCHF 655 YKTE C+ + G C YG +C F Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQF 349 >SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces pombe|chr 1|||Manual Length = 516 Score = 35.1 bits (77), Expect = 0.012 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 340 CSQLRPLETELAPIGPIAPPMFPFIVCTGEFDSSRTDH 227 C +LRP + P+ P+ P+ IVC G D++R H Sbjct: 138 CRELRPETRPVDPVSPVVSPVDGRIVCQGVVDNNRIQH 175 >SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 617 Score = 31.9 bits (69), Expect = 0.12 Identities = 18/66 (27%), Positives = 27/66 (40%) Frame = +2 Query: 464 HKSLQDRALPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGP 643 H + P + C Y + C+F H V E + P + C F G CP G Sbjct: 40 HVKENNALCPAISIGNECPYKENCKFPHDV-EAYLATKAPDI-GDKCPIFERYGVCPAGF 97 Query: 644 RCHFVA 661 +C ++A Sbjct: 98 KCRWLA 103 >SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 377 Score = 29.9 bits (64), Expect = 0.47 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Frame = +2 Query: 602 CRTFHSVGFCPYGPRCHFVA*RRGSKTQRTIVARRFIGHRSHRGGSMGVVYERRSRS-PT 778 CR +++ G C G C FV T++TI +F+ R ++ + +E R P Sbjct: 209 CRYYNANGICGKGAACRFV----HEPTRKTI-CPKFLNGRCNKAEDCNLSHELDPRRIPA 263 Query: 779 FAXFSIEXLNFPTCDVGH 832 F + N P C H Sbjct: 264 CRYFLLGKCNNPNCRYVH 281 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 29.5 bits (63), Expect = 0.62 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +2 Query: 587 YKTELCRTFHSVGFCPYGPRCHFVA*RRGSK 679 Y+ ++C+ + G+C YG C F+ R K Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMREDYK 215 Score = 25.8 bits (54), Expect = 7.6 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +2 Query: 506 SGVCKYGDKCQFAH 547 +G C YGD C+F H Sbjct: 196 TGYCGYGDTCKFLH 209 >SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 547 Score = 29.1 bits (62), Expect = 0.82 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRC 649 R+G C G+ C F+H + R +C+ F G C +GP+C Sbjct: 51 RNGTCTAGENCPFSHSLETER----------PICKYFLK-GNCKFGPKC 88 >SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces pombe|chr 1|||Manual Length = 170 Score = 28.7 bits (61), Expect = 1.1 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +2 Query: 509 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 658 G+CK G++C F H NL++ P C + G+C G C ++ Sbjct: 60 GLCKKGEQCDFLHEY----NLKKMPP-----CHFYAERGWCSNGEECLYL 100 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +2 Query: 509 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRC 649 G C G++C + H P + +C ++++GFCP GP C Sbjct: 89 GWCSNGEECLYLH---------LDPSKQVGVC-AWYNMGFCPLGPIC 125 >SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 499 Score = 28.3 bits (60), Expect = 1.4 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +1 Query: 88 LIYSCYSGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQSAL 216 L ++CY SV T N W+ + Y +TAI Q A+ Sbjct: 379 LYFACYLCSVGVYTGAGLNVTWLSANIAPHYKRATAISLQLAI 421 >SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase Gde1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1076 Score = 26.6 bits (56), Expect = 4.4 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +3 Query: 525 GINANLLTASANYAIFSVILNTRRSCVALSIRLAS 629 G N N + AS+N A+ + + R CV + ++L + Sbjct: 357 GFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGA 391 >SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr 2|||Manual Length = 298 Score = 26.6 bits (56), Expect = 4.4 Identities = 12/53 (22%), Positives = 25/53 (47%) Frame = +3 Query: 579 ILNTRRSCVALSIRLASVLMDRVAISWHNAEEARRREPSSPGGSLGIALIGAD 737 ++ T+ C+ + + + S ++ V + N A P+ P GS+G + D Sbjct: 197 VITTQAECMWIHLGVISNVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASKD 249 >SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 25.8 bits (54), Expect = 7.6 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +2 Query: 47 FSSANLKFTVSSSTLYIRATVDQFPKKHQEIRIKS 151 FSS+N ++SS I TV+QF ++ + ++S Sbjct: 979 FSSSNNLAVITSSLAKIEQTVEQFTEEGFNVNVES 1013 >SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Schizosaccharomyces pombe|chr 3|||Manual Length = 384 Score = 25.8 bits (54), Expect = 7.6 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -1 Query: 510 PLLQTVGRARSCSDLWLVAEEPVH 439 PL +T+G A S + +WL+ EE ++ Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126 >SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit Rpn3|Schizosaccharomyces pombe|chr 2|||Manual Length = 497 Score = 25.8 bits (54), Expect = 7.6 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = +2 Query: 467 KSLQDRALPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSV 622 KSL+ +P + S + GD C F + + R T +CR H+V Sbjct: 314 KSLEKTLVPYLRISQAVRIGDLCAFTDALSKYEAEFRFDGLYTLICRLRHTV 365 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,355,456 Number of Sequences: 5004 Number of extensions: 65989 Number of successful extensions: 185 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 184 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 412451140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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