Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0949
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 83 6e-17
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 35 0.012
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 32 0.12
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 30 0.47
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.62
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.82
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 29 1.1
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 28 1.4
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 27 4.4
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c... 27 4.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 7.6
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch... 26 7.6
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 7.6
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 82.6 bits (195), Expect = 6e-17
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +2
Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVA*RRGSKTQ 685
SG C+YG KCQFAHG +EL+ RHPKYK+E CR+F G+CPYG RC F+ ++
Sbjct: 338 SGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFLHDESNAQKS 397
Query: 686 RTI 694
TI
Sbjct: 398 ATI 400
Score = 31.1 bits (67), Expect = 0.20
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHF 655
YKTE C+ + G C YG +C F
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQF 349
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 340 CSQLRPLETELAPIGPIAPPMFPFIVCTGEFDSSRTDH 227
C +LRP + P+ P+ P+ IVC G D++R H
Sbjct: 138 CRELRPETRPVDPVSPVVSPVDGRIVCQGVVDNNRIQH 175
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +2
Query: 464 HKSLQDRALPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGP 643
H + P + C Y + C+F H V E + P + C F G CP G
Sbjct: 40 HVKENNALCPAISIGNECPYKENCKFPHDV-EAYLATKAPDI-GDKCPIFERYGVCPAGF 97
Query: 644 RCHFVA 661
+C ++A
Sbjct: 98 KCRWLA 103
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 29.9 bits (64), Expect = 0.47
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 602 CRTFHSVGFCPYGPRCHFVA*RRGSKTQRTIVARRFIGHRSHRGGSMGVVYERRSRS-PT 778
CR +++ G C G C FV T++TI +F+ R ++ + +E R P
Sbjct: 209 CRYYNANGICGKGAACRFV----HEPTRKTI-CPKFLNGRCNKAEDCNLSHELDPRRIPA 263
Query: 779 FAXFSIEXLNFPTCDVGH 832
F + N P C H
Sbjct: 264 CRYFLLGKCNNPNCRYVH 281
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.62
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHFVA*RRGSK 679
Y+ ++C+ + G+C YG C F+ R K
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMREDYK 215
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 506 SGVCKYGDKCQFAH 547
+G C YGD C+F H
Sbjct: 196 TGYCGYGDTCKFLH 209
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.82
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRC 649
R+G C G+ C F+H + R +C+ F G C +GP+C
Sbjct: 51 RNGTCTAGENCPFSHSLETER----------PICKYFLK-GNCKFGPKC 88
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 509 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 658
G+CK G++C F H NL++ P C + G+C G C ++
Sbjct: 60 GLCKKGEQCDFLHEY----NLKKMPP-----CHFYAERGWCSNGEECLYL 100
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 509 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRC 649
G C G++C + H P + +C ++++GFCP GP C
Sbjct: 89 GWCSNGEECLYLH---------LDPSKQVGVC-AWYNMGFCPLGPIC 125
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 88 LIYSCYSGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQSAL 216
L ++CY SV T N W+ + Y +TAI Q A+
Sbjct: 379 LYFACYLCSVGVYTGAGLNVTWLSANIAPHYKRATAISLQLAI 421
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 525 GINANLLTASANYAIFSVILNTRRSCVALSIRLAS 629
G N N + AS+N A+ + + R CV + ++L +
Sbjct: 357 GFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGA 391
>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 298
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 579 ILNTRRSCVALSIRLASVLMDRVAISWHNAEEARRREPSSPGGSLGIALIGAD 737
++ T+ C+ + + + S ++ V + N A P+ P GS+G + D
Sbjct: 197 VITTQAECMWIHLGVISNVLTAVKTVFPNVRYAYTTIPTYPSGSIGFVVASKD 249
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 47 FSSANLKFTVSSSTLYIRATVDQFPKKHQEIRIKS 151
FSS+N ++SS I TV+QF ++ + ++S
Sbjct: 979 FSSSNNLAVITSSLAKIEQTVEQFTEEGFNVNVES 1013
>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 510 PLLQTVGRARSCSDLWLVAEEPVH 439
PL +T+G A S + +WL+ EE ++
Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 467 KSLQDRALPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSV 622
KSL+ +P + S + GD C F + + R T +CR H+V
Sbjct: 314 KSLEKTLVPYLRISQAVRIGDLCAFTDALSKYEAEFRFDGLYTLICRLRHTV 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,456
Number of Sequences: 5004
Number of extensions: 65989
Number of successful extensions: 185
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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