BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0949 (837 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 112 4e-25 SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) 33 0.38 SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066) 31 0.88 SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047) 31 0.88 SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) 31 0.88 SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 30 2.7 SB_129| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7 SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7) 29 6.2 SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2 SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2 SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2 SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16) 28 8.2 >SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) Length = 527 Score = 112 bits (269), Expect = 4e-25 Identities = 43/51 (84%), Positives = 46/51 (90%) Frame = +2 Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 658 SG CKYGDKCQFAHG ELR L RHPKYKTELCRTFH++GFCPYGPRCHF+ Sbjct: 166 SGTCKYGDKCQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCHFI 216 Score = 41.1 bits (92), Expect = 0.001 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = +2 Query: 563 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655 R Q +YKTELCR F G C YG +C F Sbjct: 147 RGSQNSSRYKTELCRPFEESGTCKYGDKCQF 177 Score = 33.1 bits (72), Expect = 0.29 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +3 Query: 474 YKTELCRPFEEAGFVNMG 527 YKTELCRPFEE+G G Sbjct: 155 YKTELCRPFEESGTCKYG 172 >SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) Length = 505 Score = 32.7 bits (71), Expect = 0.38 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 590 KTELCRTFHSVGFCPYGPRCHFVA*RRGSKTQ 685 K LCR F + G+C YG +C FV ++ S Q Sbjct: 14 KPTLCRYFSANGYCFYGDQCQFVHAKQTSNDQ 45 Score = 29.9 bits (64), Expect = 2.7 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHP 583 +G C YGD+CQF H ++ N Q P Sbjct: 24 NGYCFYGDQCQFVH-AKQTSNDQARP 48 >SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066) Length = 731 Score = 31.5 bits (68), Expect = 0.88 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 503 RSGVCKYGDKCQFAHGVREL 562 R VC++G+ C FAHG EL Sbjct: 647 RPSVCRFGNTCSFAHGQEEL 666 >SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047) Length = 294 Score = 31.5 bits (68), Expect = 0.88 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 503 RSGVCKYGDKCQFAHGVREL 562 R VC++G+ C FAHG EL Sbjct: 47 RPSVCRFGNTCSFAHGQEEL 66 >SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31) Length = 650 Score = 31.5 bits (68), Expect = 0.88 Identities = 19/72 (26%), Positives = 28/72 (38%) Frame = +2 Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVA*RRGSKT 682 R C GD C + H ++ + P E C F G CPYG C + + Sbjct: 72 RGEECTRGDSCFYGHDPQKFLET-KEPDIGKE-CVNFLKSGKCPYGISCRYWK-HHTTAD 128 Query: 683 QRTIVARRFIGH 718 ++I+ F H Sbjct: 129 LKSIINEEFFSH 140 >SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) Length = 321 Score = 29.9 bits (64), Expect = 2.7 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = +2 Query: 587 YKTELCRTFHSVGFCPYGPRCHFV 658 Y+ ++C+ + GFC +G C F+ Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFL 202 >SB_129| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 156 Score = 29.1 bits (62), Expect = 4.7 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 61 PKIHSEFVDLIYSCYS-GSVSKETSRNKNKIWIKCRVRFA 177 P + FV + Y C++ GS ++++RN+ + W++ R A Sbjct: 24 PNCVAIFVGVCYDCWTTGSPQRQSNRNRKERWVRYDTRSA 63 >SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7) Length = 306 Score = 28.7 bits (61), Expect = 6.2 Identities = 11/33 (33%), Positives = 15/33 (45%) Frame = -2 Query: 704 SWRRWFSASCFLCVMPRNGNAVHKDRSQPNGKC 606 S R W + + LC A+H+D P G C Sbjct: 113 SLRPWCNRTSSLCCKTERARALHRDAGVPEGPC 145 >SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 720 Score = 28.7 bits (61), Expect = 6.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 509 GVCKYGDKCQFAHGVRELRNLQ 574 G CK+GD C+ H +E NL+ Sbjct: 194 GKCKFGDTCKRVHHFKEQHNLE 215 >SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 260 Score = 28.7 bits (61), Expect = 6.2 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 660 HNAEEARRREPSSPGGSLGIALIGADLWASYMSDGXDRQRSPXSPL 797 H EA + PS+ G+A+ A+L++++ DG ++ PL Sbjct: 152 HRKREAMLKSPSTVPRVHGLAMFLAELYSTFRVDGASGSKAQFGPL 197 >SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 489 Score = 28.3 bits (60), Expect = 8.2 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -2 Query: 611 KCDTAPSCI*-DDAEDCVVRGRREQIGIYPHIYKPRFFKRSAELGLVATCGWWRR 450 KCD P C D DC ++ + HIY+PR K L CG+ R Sbjct: 291 KCDGKPECADHSDENDCPPLINPDRCNVI-HIYQPRNKKHPFVWKLSRKCGYTNR 344 >SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16) Length = 560 Score = 28.3 bits (60), Expect = 8.2 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -3 Query: 358 RDSTGCCSQLRPLETELAPIGPIAPPMFPFIVCTGEFDSSRTDHQSHAGQTDALWL 191 R+ C++ P + ++ P+ PIAPP PF +F + H G + W+ Sbjct: 158 REKCHDCNRNAPSQAKIPPL-PIAPPSTPFEAVFADFFDYKGYHYLVVGDRLSGWV 212 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,753,381 Number of Sequences: 59808 Number of extensions: 531348 Number of successful extensions: 4728 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4604 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4726 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2359470773 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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