Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0949
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)              112   4e-25
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)               33   0.38 
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)               31   0.88 
SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047)                31   0.88 
SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)                   31   0.88 
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 30   2.7  
SB_129| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.7  
SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)             29   6.2  
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16)                   28   8.2  

>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
          Length = 527

 Score =  112 bits (269), Expect = 4e-25
 Identities = 43/51 (84%), Positives = 46/51 (90%)
 Frame = +2

Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 658
           SG CKYGDKCQFAHG  ELR L RHPKYKTELCRTFH++GFCPYGPRCHF+
Sbjct: 166 SGTCKYGDKCQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCHFI 216



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 563 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
           R  Q   +YKTELCR F   G C YG +C F
Sbjct: 147 RGSQNSSRYKTELCRPFEESGTCKYGDKCQF 177



 Score = 33.1 bits (72), Expect = 0.29
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 474 YKTELCRPFEEAGFVNMG 527
           YKTELCRPFEE+G    G
Sbjct: 155 YKTELCRPFEESGTCKYG 172


>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 590 KTELCRTFHSVGFCPYGPRCHFVA*RRGSKTQ 685
           K  LCR F + G+C YG +C FV  ++ S  Q
Sbjct: 14  KPTLCRYFSANGYCFYGDQCQFVHAKQTSNDQ 45



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHP 583
           +G C YGD+CQF H  ++  N Q  P
Sbjct: 24  NGYCFYGDQCQFVH-AKQTSNDQARP 48


>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
          Length = 731

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 503 RSGVCKYGDKCQFAHGVREL 562
           R  VC++G+ C FAHG  EL
Sbjct: 647 RPSVCRFGNTCSFAHGQEEL 666


>SB_21056| Best HMM Match : zf-CCCH (HMM E-Value=0.0047)
          Length = 294

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 503 RSGVCKYGDKCQFAHGVREL 562
           R  VC++G+ C FAHG  EL
Sbjct: 47  RPSVCRFGNTCSFAHGQEEL 66


>SB_56254| Best HMM Match : Arf (HMM E-Value=5.3e-31)
          Length = 650

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +2

Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVA*RRGSKT 682
           R   C  GD C + H  ++     + P    E C  F   G CPYG  C +      +  
Sbjct: 72  RGEECTRGDSCFYGHDPQKFLET-KEPDIGKE-CVNFLKSGKCPYGISCRYWK-HHTTAD 128

Query: 683 QRTIVARRFIGH 718
            ++I+   F  H
Sbjct: 129 LKSIINEEFFSH 140


>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 587 YKTELCRTFHSVGFCPYGPRCHFV 658
           Y+ ++C+ +   GFC +G  C F+
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFL 202


>SB_129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 61  PKIHSEFVDLIYSCYS-GSVSKETSRNKNKIWIKCRVRFA 177
           P   + FV + Y C++ GS  ++++RN+ + W++   R A
Sbjct: 24  PNCVAIFVGVCYDCWTTGSPQRQSNRNRKERWVRYDTRSA 63


>SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)
          Length = 306

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 704 SWRRWFSASCFLCVMPRNGNAVHKDRSQPNGKC 606
           S R W + +  LC       A+H+D   P G C
Sbjct: 113 SLRPWCNRTSSLCCKTERARALHRDAGVPEGPC 145


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 509 GVCKYGDKCQFAHGVRELRNLQ 574
           G CK+GD C+  H  +E  NL+
Sbjct: 194 GKCKFGDTCKRVHHFKEQHNLE 215


>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 660 HNAEEARRREPSSPGGSLGIALIGADLWASYMSDGXDRQRSPXSPL 797
           H   EA  + PS+     G+A+  A+L++++  DG    ++   PL
Sbjct: 152 HRKREAMLKSPSTVPRVHGLAMFLAELYSTFRVDGASGSKAQFGPL 197


>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 611 KCDTAPSCI*-DDAEDCVVRGRREQIGIYPHIYKPRFFKRSAELGLVATCGWWRR 450
           KCD  P C    D  DC      ++  +  HIY+PR  K      L   CG+  R
Sbjct: 291 KCDGKPECADHSDENDCPPLINPDRCNVI-HIYQPRNKKHPFVWKLSRKCGYTNR 344


>SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16)
          Length = 560

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 358 RDSTGCCSQLRPLETELAPIGPIAPPMFPFIVCTGEFDSSRTDHQSHAGQTDALWL 191
           R+    C++  P + ++ P+ PIAPP  PF     +F   +  H    G   + W+
Sbjct: 158 REKCHDCNRNAPSQAKIPPL-PIAPPSTPFEAVFADFFDYKGYHYLVVGDRLSGWV 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,753,381
Number of Sequences: 59808
Number of extensions: 531348
Number of successful extensions: 4728
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4726
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)