Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0949
(837 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 82 5e-16
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 80 2e-15
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 40 1e-05
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 43 3e-04
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 43 3e-04
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 38 0.008
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 38 0.011
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 38 0.011
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 38 0.011
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 37 0.014
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 37 0.014
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 37 0.019
At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein ... 37 0.019
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 36 0.025
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 36 0.033
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 36 0.033
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 36 0.044
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 36 0.044
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 36 0.044
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 36 0.044
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 35 0.077
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 33 0.23
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 33 0.23
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 33 0.31
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 33 0.31
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 32 0.41
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 32 0.54
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 31 0.72
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 31 0.72
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 30 1.7
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 30 1.7
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 30 1.7
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 30 2.2
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 30 2.2
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 30 2.2
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 29 3.8
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-... 29 5.1
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 28 6.7
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 28 6.7
>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 308
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/68 (52%), Positives = 44/68 (64%)
Frame = +2
Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVA*RRGSKTQ 685
+G C YGD CQFAHG++ELR + RHP+YKTE+CR + CPYG RCHF R Q
Sbjct: 234 TGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF---RHSLSEQ 290
Query: 686 RTIVARRF 709
+VA F
Sbjct: 291 EKLVAAGF 298
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 590 KTELCRTFHSVGFCPYGPRCHFVA*RRGSKTQRTIV 697
KTELC + G CPYG C F G K R ++
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFA---HGIKELRPVI 256
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 80.2 bits (189), Expect = 2e-15
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = +2
Query: 506 SGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
+G C YGD CQFAHG+ ELR + RHP+YKTE+CR + CPYG RCHF
Sbjct: 244 TGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHF 293
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 548 GVRELRNLQ--RHPKYKTELCRTFHSVGFCPYGPRCHF 655
G RE L+ R KTELC + G C YG C F
Sbjct: 218 GEREALELEVYRQGMMKTELCNKWQETGACCYGDNCQF 255
>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 252
Score = 39.5 bits (88), Expect(2) = 1e-05
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 575 RHPKYKTELCRTFHSVGFCPYGPRCHF 655
+ P +KT +C + + G+CP+G CHF
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHF 166
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 506 SGVCKYGDKCQFAHGVREL 562
+G C +G C FAHG EL
Sbjct: 155 TGYCPFGSHCHFAHGPSEL 173
Score = 27.5 bits (58), Expect(2) = 1e-05
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 443 TGSSATSHKSLQDRALPTV*RSGVCKYG-DKCQFAHGVRELR 565
+ SS+ KS L R+G C Y C FAH ELR
Sbjct: 61 SSSSSEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELR 102
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +2
Query: 506 SGVCKYGDKCQFAH-GVR------ELRNLQRHPKYKTE-LCRTFHSVGFCPYGPRCHF 655
+G CKYGD C+++H GVR L N P + C F S GFC +GP C F
Sbjct: 273 TGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKF 330
Score = 35.1 bits (77), Expect = 0.058
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL-----CRTFHSVGFCPYGPRCHF 655
R+G+C YG C++ H +++ + + E C F G C YGP C +
Sbjct: 58 RTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKY 113
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +2
Query: 506 SGVCKYGDKCQFAH-GVR------ELRNLQRHPKYKTE-LCRTFHSVGFCPYGPRCHF 655
+G CKYGD C+++H GVR L N P + C F S GFC +GP C F
Sbjct: 273 TGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKF 330
Score = 35.1 bits (77), Expect = 0.058
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL-----CRTFHSVGFCPYGPRCHF 655
R+G+C YG C++ H +++ + + E C F G C YGP C +
Sbjct: 58 RTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKY 113
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Frame = +2
Query: 464 HKSLQDRA-LPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL----------CRT 610
H S +RA +G CKYGD C+++H L LQ P + C
Sbjct: 258 HHSFSERAECRFFMNTGTCKYGDDCKYSHPKERL--LQSPPTLLNPIVLPARPGQPACGN 315
Query: 611 FHSVGFCPYGPRCHF 655
F + GFC +G C F
Sbjct: 316 FKAYGFCKFGANCKF 330
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRN--LQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
R+G C YG+ C++ H + L + + + + G C YGP C +
Sbjct: 55 RTGQCGYGNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDCETGACKYGPTCKY 107
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = +2
Query: 506 SGVCKYGDKCQFAHGVRE------LRNLQRHPKYKTEL-CRTFHSVGFCPYGPRCHF 655
+G CKYG C++ H L N+ P + E C + G C +G C F
Sbjct: 96 TGACKYGPTCKYHHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKF 152
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 479 DRALPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPY 637
++ P ++G+C++G C+F H + H Y +F SVGF PY
Sbjct: 132 EKPCPYYMQTGLCRFGVACKFHHPHPHSQPSNGHSAYAMS---SFPSVGF-PY 180
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
R G CK GD C+FAHGV E HP +Y+T+ C+
Sbjct: 129 RKGGCKKGDSCEFAHGVFE---CWLHPARYRTQPCK 161
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
R G C+ GD C++AHGV E HP +Y+T LC+
Sbjct: 311 RKGACRRGDMCEYAHGVFE---CWLHPAQYRTRLCK 343
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 491 PTV*RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
P R G C GD C+FAHGV E HP +Y+TE C+
Sbjct: 129 PEFRRGGDCSRGDDCEFAHGVFE---CWLHPIRYRTEACK 165
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 533 CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
C FAH G + R R +Y E+C F G C G C F
Sbjct: 104 CPFAHPGEKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEF 145
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRH---------PKYKTELCRTFHSVGFCPYGPRCHF 655
R+G CKYG C+F H VR + R K C+ + G C YG C F
Sbjct: 112 RTGSCKYGSSCKFNHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGCKYGESCRF 171
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAH--------GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
R+G CKYG+ C+F+H V EL L + + C + G C +G C F
Sbjct: 159 RTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSDCKF 217
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELR-------NLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
++G CK+ KC++ H L N + P + +C + G C +GP C F
Sbjct: 345 KTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSMCTHYSRYGICKFGPACRF 403
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
+ G CK GD C++AHGV E HP +Y+T LC+
Sbjct: 307 KKGSCKQGDMCEYAHGVFE---CWLHPAQYRTRLCK 339
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
R G C GD C++AHGV E HP +YKT LC+
Sbjct: 261 RKGSCPKGDSCEYAHGVFE---SWLHPAQYKTRLCK 293
>At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 359
Score = 36.7 bits (81), Expect = 0.019
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
R G CK GD C+F+HGV E HP +Y+T+ C+
Sbjct: 128 RKGCCKRGDACEFSHGVFE---CWLHPARYRTQPCK 160
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 36.3 bits (80), Expect = 0.025
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 491 PTV*RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
P R G C GD+C FAHGV E HP +Y+TE C+
Sbjct: 107 PEFSRHGDCSRGDECGFAHGVFE---CWLHPSRYRTEACK 143
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 533 CQFAH-GVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
C F+H G + R R Y E+C F G C G C F
Sbjct: 82 CPFSHPGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGF 123
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 35.9 bits (79), Expect = 0.033
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELC 604
R+G C GD C+FAHGV E HP +Y+T C
Sbjct: 102 RNGACHRGDSCEFAHGVFE---YWLHPARYRTRAC 133
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 35.9 bits (79), Expect = 0.033
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHF 655
+KT +C + G+CP+G +CHF
Sbjct: 261 WKTRICNKWEITGYCPFGAKCHF 283
Score = 31.1 bits (67), Expect = 0.95
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 506 SGVCKYGDKCQFAHGVREL 562
+G C +G KC FAHG EL
Sbjct: 272 TGYCPFGAKCHFAHGAAEL 290
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELR 565
R+G C Y C FAH V ELR
Sbjct: 101 RAGTCPYITNCNFAHTVEELR 121
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHFVA*RRGSKTQRTIVARRFIGHRSHRGGSMG 745
+K C+ F++ CPYG C F+ + ++ G+ S GG G
Sbjct: 173 FKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSG 225
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 35.5 bits (78), Expect = 0.044
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
R G C GD C++AHG+ E HP +Y+T LC+
Sbjct: 259 RKGSCSRGDTCEYAHGIFE---CWLHPAQYRTRLCK 291
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 35.5 bits (78), Expect = 0.044
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHF 655
+KT LC F G CP+G +CHF
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHF 292
Score = 35.5 bits (78), Expect = 0.044
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 506 SGVCKYGDKCQFAHGVRELRN 568
+G C +GDKC FAHG EL N
Sbjct: 281 TGQCPFGDKCHFAHGQAELHN 301
Score = 33.9 bits (74), Expect = 0.13
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELR 565
R+G C+ G+ C FAHG+ +LR
Sbjct: 114 RAGTCRNGELCNFAHGIEDLR 134
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 590 KTELCRTFHSVGFCPYGPRCHFV 658
+ +LCR F CPYG RC+F+
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFI 207
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 35.5 bits (78), Expect = 0.044
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
R G C GD C++AHGV E HP +Y+T LC+
Sbjct: 264 RKGSCPKGDSCEYAHGVFE---SWLHPAQYRTRLCK 296
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 35.5 bits (78), Expect = 0.044
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-KYKTELCR 607
R G C+ GD C+F+HGV E HP +Y+T+ C+
Sbjct: 140 RKGSCRRGDSCEFSHGVFE---CWLHPSRYRTQPCK 172
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 34.7 bits (76), Expect = 0.077
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 509 GVCKYGDKCQFAHGVRELR 565
G C YGD+C FAHG ELR
Sbjct: 217 GNCTYGDRCHFAHGESELR 235
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 578 HP--KYKTELCRTFHSVGFCPYGPRCHF 655
HP YKT++C + S G C YG RCHF
Sbjct: 201 HPGSNYKTKICDRY-SKGNCTYGDRCHF 227
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 539 FAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFV 658
F +E+ ++ K++ C F S CP+G CHF+
Sbjct: 21 FKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFL 60
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTEL----------CRTFHSVGFCPYGPRCH 652
R+G CK+G C+F H + + R K + + C+ + G C YG C
Sbjct: 121 RTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCR 180
Query: 653 F 655
F
Sbjct: 181 F 181
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVREL-------RNLQRHPKYKTEL-CRTFHSVGFCPYGPRCHF 655
R+G CKYG+ C+F H + + N P E+ C + G C YG C F
Sbjct: 169 RTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKF 227
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP--------KYKTELCRTFHSVGFCPYGPRCHF 655
++G CK+ C++ H L L + + +C + G C +GP C F
Sbjct: 357 KTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFGPACRF 415
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVR 556
R G+CK+G C+F H V+
Sbjct: 403 RYGICKFGPACRFDHSVQ 420
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 509 GVCKYGDKCQFAHGVRELR 565
G C +GD+C FAHG ELR
Sbjct: 225 GNCTFGDRCHFAHGEAELR 243
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 578 HP--KYKTELCRTFHSVGFCPYGPRCHF 655
HP +KT++C F S G C +G RCHF
Sbjct: 209 HPGSNFKTKICERF-SKGNCTFGDRCHF 235
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 590 KTELCRTFHSVGFCPYGPRCHFV 658
K++ C F S CP+G CHF+
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFL 60
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 32.7 bits (71), Expect = 0.31
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +2
Query: 515 CKYGDKCQFAHGVRE----LRNLQRHPKYKTE-LCRTFHSVGFCPYGPRCHF 655
CKYG KC+F H E + P+ +E +C + G C +G C F
Sbjct: 240 CKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFGLSCKF 291
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVREL----RNLQRHPKYKTEL-----------CRTFHSVGFCPY 637
++G CK+G++C+F H L + + P K L C + G C Y
Sbjct: 431 KTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKY 490
Query: 638 GPRCHF 655
G C F
Sbjct: 491 GATCKF 496
>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 397
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAH-----GV--RELRNLQRHPKYKTEL-CRTFHSVGFCPYGPRCHF 655
++G CK+G C+F H G+ R N+ +P E+ C F G C +G C F
Sbjct: 96 KTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKF 154
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAH-GVREL--RNLQRHPKYKTEL----CRTFHSVGFCPYGPRCHF 655
R+G+C++G C+F H REL + +Y + C + G C +G C F
Sbjct: 51 RTGLCRFGSTCRFNHPRDRELVIATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKF 108
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVR 556
R G+CK+G C+F H +R
Sbjct: 331 RYGICKFGPSCKFDHPMR 348
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
R+GVC YG++C++ H +R ++P ++ C+ + G C +G C F
Sbjct: 56 RTGVCGYGNRCRYNHPRDRASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKF 113
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAH---GVRELRNLQRHP-----KYKTELCRTFHSVGFCPYGPRCHF 655
++G CK+G C+F H V N P + + C + GFC +G C F
Sbjct: 300 KTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKF 358
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 31.9 bits (69), Expect = 0.54
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAH---------GVR-ELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 652
R+GVC YG +C+F H GVR E L + +C+ F G C +G C
Sbjct: 40 RTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGH--PVCQHFMRTGTCKFGASCK 97
Query: 653 FVA*RRG 673
+ R+G
Sbjct: 98 YHHPRQG 104
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRE--------LRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
R+G CK+G C++ H V L ++ + C F G C +GP C F
Sbjct: 293 RTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKF 351
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRE---LRNLQRH-----PKYKTELCRTFHSVGFCPYGPRCHFV 658
R+GVC YG +C+F H L L+ + +C+ F G C +G C +
Sbjct: 53 RTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYH 112
Query: 659 A*RRG 673
R+G
Sbjct: 113 HPRQG 117
Score = 31.1 bits (67), Expect = 0.95
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVR-------ELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHF 655
R+G CK+G C+F H + L ++ + C F G C +GP C F
Sbjct: 302 RTGDCKFGTSCRFHHPMEAASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKF 359
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELRNLQRHP-----KYKTELCRTFHSVGFCPYGPRCHF 655
++G CK+G C+F H R+ Q P LC + G C +GP C F
Sbjct: 254 KTGDCKFGTVCKFHHP----RDRQTPPPDCVLSSGEPLCVFYSRYGICKFGPSCKF 305
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
R+G+C++G C+F H + R +P + C + G C +G C F
Sbjct: 53 RTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKF 110
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELR-------NLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
++G CK+G C+F H + N+ +P + + C F +G C +G C F
Sbjct: 98 KTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKF 156
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVR 556
R G+CK+G C+F H +R
Sbjct: 293 RYGICKFGPSCKFDHPMR 310
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 30.3 bits (65), Expect = 1.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHFV 658
Y+ ++C+ + G+C YG C F+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFL 259
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 30.3 bits (65), Expect = 1.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHFV 658
Y+ ++C+ + G+C YG C F+
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFL 259
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 30.3 bits (65), Expect = 1.7
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 587 YKTELCRTFHSVGFCPYGPRCHFV 658
Y+ ++C+ + G+C YG C F+
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFL 224
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 473 LQDRALPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 652
+ DR L G C G+ C+F+H ++ N +C TF+ C YG RC
Sbjct: 1 MSDRILCKFFVHGSCLKGENCEFSHDSKDPPN---------NVC-TFYQKRICLYGSRCR 50
Query: 653 F 655
+
Sbjct: 51 Y 51
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 473 LQDRALPTV*RSGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 652
+ DR L G C G+ C+F+H ++ N +C TF+ C YG RC
Sbjct: 1 MSDRILCKFFVHGSCLKGENCEFSHDSKDPPN---------NVC-TFYQKRICLYGSRCR 50
Query: 653 F 655
+
Sbjct: 51 Y 51
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELR 565
R C +G++C++AHG ELR
Sbjct: 90 REASCSHGNECKYAHGEAELR 110
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 515 CKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVA*RR 670
C+Y DKC+F H + E Q+ + + C S C YG C F+ R
Sbjct: 121 CQYKDKCRFNHDI-EAFKAQKADDIEGQ-CPFVASGMKCAYGLSCRFLGSHR 170
>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
Zea mays, EMBL:X58573
Length = 235
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 763 PSLIYDAHRSAPMRAMPNEPPGDDGSLRLASSALC 659
PS I+ R AP+ A + P DG+ RL +S +C
Sbjct: 3 PSFIFVEDRPAPLDATSDPPSLFDGTTRLYTSYVC 37
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
R+G+C++G C+F H + R +P + C + G C +G C F
Sbjct: 32 RTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKF 89
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELR-------NLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
++G CK+G C+F H + N+ +P + + C F +G C +G C F
Sbjct: 77 KTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKF 135
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVR 556
R G+CK+G C+F H +R
Sbjct: 279 RYGICKFGPSCKFDHPMR 296
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHG------VRELRNLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
R+G+C++G C+F H + R +P + C + G C +G C F
Sbjct: 53 RTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKF 110
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVRELR-------NLQRHP-KYKTELCRTFHSVGFCPYGPRCHF 655
++G CK+G C+F H + N+ +P + + C F +G C +G C F
Sbjct: 98 KTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKF 156
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 503 RSGVCKYGDKCQFAHGVR 556
R G+CK+G C+F H +R
Sbjct: 300 RYGICKFGPSCKFDHPMR 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,959,157
Number of Sequences: 28952
Number of extensions: 364301
Number of successful extensions: 1067
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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