Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0948
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 97 1e-20
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 50 2e-06
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.12
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 32 0.65
10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397 30 2.0
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122 30 2.0
01_06_0250 + 27876358-27879261 30 2.6
06_03_0298 - 19272257-19273714 29 4.6
06_01_0183 + 1422798-1422829,1422989-1423239,1423669-1423945,142... 29 4.6
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 8.0
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +2
Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
K+++E IN+ +EN KYLPG KL +NV+A PD+ A KDA++L+FV PHQFV IC L+G
Sbjct: 53 KKLSESINQANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVG 112
Query: 428 KIKPTAAALSLIKGFDIA 481
K++P +SLIKG +IA
Sbjct: 113 KLRPGTEGISLIKGMEIA 130
Score = 59.7 bits (138), Expect = 3e-09
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +3
Query: 96 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEII 242
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEIL 49
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +2
Query: 254 VTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKI 433
V IN +H N KYL H+LP N+ A +A AD VP QF + + +
Sbjct: 144 VCRSINHSHINCKYLRDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHV 203
Query: 434 KPTAAALSLIKGFDI 478
P +SL KG ++
Sbjct: 204 DPKLPFISLSKGLEL 218
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 78 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 191
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.9 bits (69), Expect = 0.65
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 612 DNQWSFRRIFPQQPPMQYWLPL 547
D++W R+F +QPP+++WL +
Sbjct: 93 DSEWVICRVFKKQPPIEHWLEM 114
>10_08_0637 - 19482088-19482108,19482280-19482881,19484611-19485397
Length = 469
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 735 GFRVSWIGLPTVDYHKRLLVIQTPG 809
G RV++ GLP +H RLL I PG
Sbjct: 327 GLRVAYPGLPDHPHHARLLAIANPG 351
>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
Length = 294
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 672 PWWWTMXTHRNMWSVKDHCGSGFRV--SWIGLPTVDYHK 782
P W +M T ++WS +D G RV W P V Y++
Sbjct: 189 PTWQSMRTFGSLWSAEDWATQGGRVKTDWKQAPFVTYYR 227
>01_06_0250 + 27876358-27879261
Length = 967
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 476 IAEVVASILYHYYYKMPKNSLCCINGS-QYCIGG 574
++++VAS + H YY LC + GS Y + G
Sbjct: 137 VSQLVASFVLHGYYSSASGELCVVGGSGSYSVDG 170
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 114 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 233
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>06_01_0183 +
1422798-1422829,1422989-1423239,1423669-1423945,
1424827-1425034,1425129-1425203,1425301-1425375,
1425494-1425574,1425666-1425740,1425829-1426002,
1426105-1426134
Length = 425
Score = 29.1 bits (62), Expect = 4.6
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = -3
Query: 616 SRQPMVVSQNFSSATSDAILAPINTAQGIFRHLVIIV-I*DRCHHFGYIKSLNQRQSSCS 440
SR P++++ NF+S + AI + + A + L+ I H + SL ++ +
Sbjct: 145 SRSPLLINHNFASRLAAAISSKHHAAAAVEADLLRAERIASVSHQLYSMSSLESARADLA 204
Query: 439 WLYFSKQSRADSSDKLMRHHKY*KISIFCSFNYIWNSNNI-RRQFVARQVFNIF 281
L ++A++ DK+ R +Y S F S + N+ + +AR+VF +F
Sbjct: 205 -LLILYLNKAEARDKICRAIQY--GSKFVSNGQPGPAQNVDKSTSLARKVFRLF 255
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 93 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 236
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,157,652
Number of Sequences: 37544
Number of extensions: 512199
Number of successful extensions: 1273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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