Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0948
(834 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0) 72 7e-13
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_22860| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_6904| Best HMM Match : NifT (HMM E-Value=8.7) 29 4.6
>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
Length = 358
Score = 71.7 bits (168), Expect = 7e-13
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 EVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQ---FVRTICSTL 421
++TEIIN H NVKYLP +P N+ A PDVVE KDAD+L+FVVPHQ +T + +
Sbjct: 53 KLTEIINTKHMNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQGLDHTKTGLTLV 112
Query: 422 LGKIKPT--AAALSLIKGFDIAEVVASILY 505
IK +S++ G ++A+ VA L+
Sbjct: 113 SNVIKEALDLPEVSVLMGANLAKEVARELF 142
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +3
Query: 105 KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEG 248
++ + +V I+GSGNWGS IA+IVG+N ++ F + V M+ YEE+++G
Sbjct: 3 EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDG 51
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 631 PLMRDIIQTDYFRVRGGGP*XRIEICGALKTIVAVGSG 744
PL++ + T YF++ +E+CGALK VA+G+G
Sbjct: 216 PLLKQLFHTHYFKINVVEDADTVELCGALKNAVAIGAG 253
Score = 36.7 bits (81), Expect = 0.023
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 510 IITRCLKIP-CAVLMGANIASEVAEEKFCETTIG 608
+I L +P +VLMGAN+A EVA E F E TIG
Sbjct: 115 VIKEALDLPEVSVLMGANLAKEVARELFGEATIG 148
>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEG 248
KV ++GSGNWG+AIA+I+G N + F ++V M+VY+ +I G
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLING 272
Score = 43.2 bits (97), Expect = 3e-04
Identities = 28/76 (36%), Positives = 38/76 (50%)
Frame = +2
Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
++++EIIN HENVK LPG K+P NV F+ ++C +
Sbjct: 273 RKLSEIINTEHENVKDLPGFKIPPNV-----------------------FLDSVCQKIKS 309
Query: 428 KIKPTAAALSLIKGFD 475
IKP A+SLIKG D
Sbjct: 310 SIKPDVLAISLIKGLD 325
Score = 35.1 bits (77), Expect = 0.071
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 540 AVLMGANIASEVAEEKFCETTIGCR 614
+V+MGAN+A EVA+ F ETTIG R
Sbjct: 348 SVMMGANLADEVAKGFFSETTIGSR 372
>SB_22860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 810 GPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
G ES P C NP G +S PG CHN
Sbjct: 252 GNESNGPGKECHNP--GNESNDPGKECHN 278
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 822 HLPWGPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
H P G +S P C NP G +S PG CHN
Sbjct: 277 HNP-GNKSNDPGKECHNP--GNESNDPGKECHN 306
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 822 HLPWGPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
H P G +S P C NP G +S PG CHN
Sbjct: 305 HNP-GNKSNDPGKKCHNP--GNESNDPGKECHN 334
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -1
Query: 822 HLPWGPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
H P G ES P C NP G +S PG CH+
Sbjct: 347 HNP-GNESNDPGKECHNP--GNESNDPGKECHH 376
>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 609 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 517
NQ F + P P +YW P+I R F +L
Sbjct: 408 NQRPFTLVVPDLQPRKYWWPIINSRAFETLL 438
>SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)
Length = 408
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 609 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 517
NQ F + P P +YW P+I R F +L
Sbjct: 302 NQRPFTIVIPNLQPRRYWWPIINSRAFETLL 332
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,936,153
Number of Sequences: 59808
Number of extensions: 548000
Number of successful extensions: 1356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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