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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0948
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)              72   7e-13
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   3e-06
SB_22860| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)                       29   4.6  

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
 Frame = +2

Query: 251 EVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQ---FVRTICSTL 421
           ++TEIIN  H NVKYLP   +P N+ A PDVVE  KDAD+L+FVVPHQ     +T  + +
Sbjct: 53  KLTEIINTKHMNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQGLDHTKTGLTLV 112

Query: 422 LGKIKPT--AAALSLIKGFDIAEVVASILY 505
              IK       +S++ G ++A+ VA  L+
Sbjct: 113 SNVIKEALDLPEVSVLMGANLAKEVARELF 142



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
 Frame = +3

Query: 105 KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEG 248
           ++ + +V I+GSGNWGS IA+IVG+N    ++ F + V M+ YEE+++G
Sbjct: 3   EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDG 51



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 631 PLMRDIIQTDYFRVRGGGP*XRIEICGALKTIVAVGSG 744
           PL++ +  T YF++        +E+CGALK  VA+G+G
Sbjct: 216 PLLKQLFHTHYFKINVVEDADTVELCGALKNAVAIGAG 253



 Score = 36.7 bits (81), Expect = 0.023
 Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 510 IITRCLKIP-CAVLMGANIASEVAEEKFCETTIG 608
           +I   L +P  +VLMGAN+A EVA E F E TIG
Sbjct: 115 VIKEALDLPEVSVLMGANLAKEVARELFGEATIG 148


>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +3

Query: 120 KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEG 248
           KV ++GSGNWG+AIA+I+G N     + F ++V M+VY+ +I G
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLING 272



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 28/76 (36%), Positives = 38/76 (50%)
 Frame = +2

Query: 248 KEVTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 427
           ++++EIIN  HENVK LPG K+P NV                       F+ ++C  +  
Sbjct: 273 RKLSEIINTEHENVKDLPGFKIPPNV-----------------------FLDSVCQKIKS 309

Query: 428 KIKPTAAALSLIKGFD 475
            IKP   A+SLIKG D
Sbjct: 310 SIKPDVLAISLIKGLD 325



 Score = 35.1 bits (77), Expect = 0.071
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 540 AVLMGANIASEVAEEKFCETTIGCR 614
           +V+MGAN+A EVA+  F ETTIG R
Sbjct: 348 SVMMGANLADEVAKGFFSETTIGSR 372


>SB_22860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 810 GPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
           G ES  P   C NP  G +S  PG  CHN
Sbjct: 252 GNESNGPGKECHNP--GNESNDPGKECHN 278



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 822 HLPWGPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
           H P G +S  P   C NP  G +S  PG  CHN
Sbjct: 277 HNP-GNKSNDPGKECHNP--GNESNDPGKECHN 306



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 822 HLPWGPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
           H P G +S  P   C NP  G +S  PG  CHN
Sbjct: 305 HNP-GNKSNDPGKKCHNP--GNESNDPGKECHN 334



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 822 HLPWGPESG*PAAFCGNPP*GGQSRKPGTHCHN 724
           H P G ES  P   C NP  G +S  PG  CH+
Sbjct: 347 HNP-GNESNDPGKECHNP--GNESNDPGKECHH 376


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 609 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 517
           NQ  F  + P   P +YW P+I  R F  +L
Sbjct: 408 NQRPFTLVVPDLQPRKYWWPIINSRAFETLL 438


>SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 609 NQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 517
           NQ  F  + P   P +YW P+I  R F  +L
Sbjct: 302 NQRPFTIVIPNLQPRRYWWPIINSRAFETLL 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,936,153
Number of Sequences: 59808
Number of extensions: 548000
Number of successful extensions: 1356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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