Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0946
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    60   3e-10
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    38   0.002
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    27   2.4  
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   3.2  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.8  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   9.8  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   9.8  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = +3

Query: 576 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLG 710
           L  W QDN Y+  G+RPP  SF  C  SIF +H E+ NIWTHL G
Sbjct: 54  LEPWQQDNQYIISGYRPPSFSFYLCVKSIFHVHNESVNIWTHLFG 98


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = +3

Query: 576 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHL 704
           LP    +N Y+ +G+R    S   CF SI   H ET NIWTHL
Sbjct: 174 LPVQWHNNPYIIRGYRF-YTSKRKCFRSILSWHNETFNIWTHL 215


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 507 REQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYLH 611
           +EQ + ++RK+ E  +N+C    LP +L ++ +LH
Sbjct: 140 KEQGKGYLRKLIEPIFNICDQEGLPIYL-ESSHLH 173


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 391 CPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAA 510
           CPL  TP+ +HL+D ++   +K GV       G L    A
Sbjct: 206 CPL--TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKA 243


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 707 WAAWHSLASRFYFLSRPIYEIPMQEKVIFRVFL 805
           WA   SL SRF  LS  I  I + +  IF  +L
Sbjct: 187 WAVLSSLDSRFLQLSEQIRSIKLFDSSIFSDYL 219


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 334 SPHRDPILACVAIHRRT 284
           SPH +PILA  +  RRT
Sbjct: 334 SPHEEPILASTSADRRT 350


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 277 QSVSSDGLRRRQGW-DPDAESL 339
           Q +  D +RR QGW  PD E+L
Sbjct: 354 QQIKEDEIRRAQGWFFPDKEAL 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,096
Number of Sequences: 5004
Number of extensions: 73577
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)