Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0946
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831 53 2e-07
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 47 2e-05
06_03_0907 - 25851673-25852368,25853531-25853585,25853973-258540... 44 1e-04
03_02_0040 + 5221015-5221322,5221423-5222254 42 6e-04
06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781 40 0.002
02_01_0595 + 4420112-4420401,4420518-4420607,4421883-4421931,442... 39 0.006
08_02_1583 + 28036125-28037030,28037411-28037656 33 0.36
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 31 1.1
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 30 1.9
02_05_0900 + 32616049-32616135,32616593-32616695,32616925-326170... 30 2.6
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 29 4.5
03_02_0322 + 7448046-7448135,7448402-7448515,7449119-7449437,744... 29 4.5
02_05_0029 - 25194827-25195095,25195129-25197970 29 4.5
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 29 5.9
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 29 5.9
12_02_0189 + 15165485-15168694 28 7.8
>12_02_0500 + 19735879-19736144,19736325-19736664,19738181-19738831
Length = 418
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 567 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLG 710
+ LP WL+DN+++H +R P SIF IH ET N+WTHL+G
Sbjct: 47 YEELPEWLKDNEFIHGYYRCEWP-MKETILSIFSIHNETLNVWTHLIG 93
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +3
Query: 552 WNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLG 710
+ + +R LP +++DN+Y+ + +R P S F IH ET N+WTHL+G
Sbjct: 31 YGLVEYRALPGYMRDNEYILRHYRCEWP-LPQVLLSAFSIHNETLNVWTHLIG 82
>06_03_0907 -
25851673-25852368,25853531-25853585,25853973-25854068,
25854170-25854435
Length = 370
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 504 RREQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTET 683
R++Q E RK + + LP ++++N+++ +R P +A S+F H ET
Sbjct: 30 RKQQKREEKRK----ECRLVSYHELPDYMKENEFILDYYRSEWPILNALL-SLFSWHNET 84
Query: 684 GNIWTHLLG 710
NIWTHLLG
Sbjct: 85 INIWTHLLG 93
>03_02_0040 + 5221015-5221322,5221423-5222254
Length = 379
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +3
Query: 531 RKVWEASWNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLG 710
++ E + + + LP +L+ N+++ +R P A S F +H ET N+WTHL+G
Sbjct: 49 KRCCERKYELVSYDALPAFLKHNEFIIDYYRSEWPIKQALL-SAFAVHNETVNVWTHLIG 107
>06_03_0958 - 26310106-26310783,26312176-26312332,26312447-26312781
Length = 389
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +3
Query: 567 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGLRGIHW 728
F LP +L+DN+++ +GH S S F H ET N+WTHL G W
Sbjct: 70 FEELPDYLKDNEFI-RGHYRCEWSVRDALRSAFAWHNETLNVWTHLGGFFLFLW 122
>02_01_0595 +
4420112-4420401,4420518-4420607,4421883-4421931,
4423337-4424020
Length = 370
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +3
Query: 567 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLG 710
+ LP +L+DN+++ +R P A S F H ET N+WTHL G
Sbjct: 55 YDELPDFLRDNEFIRGYYRAEWPLRDAAL-SAFSWHNETLNVWTHLGG 101
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 440 WLKF*KLACYPMRLIWEHWPITPRTGRGIRSQ 535
W F KLAC P+ + E WP +P R + S+
Sbjct: 169 WRDFLKLACMPLAAVVESWPTSPADLREVASR 200
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 255 SHIFACFNHAKMGNWQPLAAVTFVSGTRTVIRKSKVQL 142
+H+ C + GNW+ + + F+ G + V K K+Q+
Sbjct: 139 AHLQLCIESSSNGNWRSIWTLEFIDGLQLVEIKGKIQV 176
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 486 GSTGP*RREQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYL 608
G G R EQA ++KVW + WN + + D+DYL
Sbjct: 1190 GDEGDQRWEQAWMAIKKVWASKWNERAYFSTRKVKLDHDYL 1230
>02_05_0900 +
32616049-32616135,32616593-32616695,32616925-32617004,
32617118-32617447,32617623-32617735,32617861-32617903,
32617968-32618045,32618328-32618339
Length = 281
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 190 GHGGQWLPISHLRVIETSEDVGVESDIGSQSVSSDGLRRRQGWDPDA 330
GHG Q LP+S + I+ V +E G + S + ++RR+ P+A
Sbjct: 72 GHGNQ-LPLSTRKYIQNLLKVNMEGQYGPEWPSEEKIKRREMVAPEA 117
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 29.1 bits (62), Expect = 4.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +1
Query: 166 NCSCTANKGHGGQWLPISHLRVIE 237
+C C +KG + +P+ HLR+++
Sbjct: 557 DCKCEQHKGWSNEMIPLDHLRMVD 580
>03_02_0322 +
7448046-7448135,7448402-7448515,7449119-7449437,
7449519-7450453
Length = 485
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 511 SRRYGPVLPNQSH-RITRQLSKLQPFRHPTDVDPPVLK 401
S+R P+LP++ H TR +K+ +V PP+LK
Sbjct: 314 SQRIDPLLPSKVHIDATRSFTKVSQTEIKPEVQPPILK 351
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = +1
Query: 523 NSFAKYGRRRGTCAISDICHVGYKTTIIYTKDIDRLYLRSAHVLHQFSESTLRQVTFGRI 702
N F G+ A S++ +++ ++ + LYLR+ Q + +
Sbjct: 289 NVFGSLGKLEYFSAQSNLFRGPLPSSLSHSPSLKMLYLRNNSFHGQIDLNCSAMSQLSSL 348
Query: 703 SLGCVAFIGVAILLSVSSHLRNSN 774
LG FIG LS HLR+ N
Sbjct: 349 DLGTNKFIGTIDALSDCHHLRSLN 372
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 440 WLKF*KLACYPMRLIWEHWPITPRTGRGI 526
W F +L CYP+ + WP P + R +
Sbjct: 133 WRDFLRLHCYPLESFIDQWPSNPPSFRQV 161
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = -2
Query: 294 IGGHALGSNIRFHSHIFACFNHAKMGNWQP----LAAVTFVSGTRTVIR--KSKVQLRH 136
IGG ++G+ HS AC+ H K N P L+AV +SG R +SK + H
Sbjct: 122 IGGFSMGAAAALHSA--ACYAHGKFANSMPYPITLSAVISLSGWLPCSRTLRSKTESSH 178
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 280 SVSSDGLRRRQGWDPD 327
+V S GLRRR WDPD
Sbjct: 767 TVDSVGLRRRTAWDPD 782
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,272,102
Number of Sequences: 37544
Number of extensions: 513948
Number of successful extensions: 1459
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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