Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0946
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   3e-17
SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4)                    40   0.003
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   38   0.010
SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006)                 35   0.069
SB_25466| Best HMM Match : HlyIII (HMM E-Value=1.6e-22)                33   0.37 
SB_48981| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-25)                 29   3.4  
SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)           29   3.4  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   4.6  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
 Frame = +3

Query: 510 EQAEEFVRKVWEAS---WNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTE 680
           E+AE+  ++V EA    W       LP WL+DN++L   HRPPL SF +CF S+F+IHTE
Sbjct: 201 EKAEKIRKRVIEAGRSGWYTLSHIELPHWLRDNEFLEDSHRPPLNSFKSCFKSMFKIHTE 260

Query: 681 TGNIWTHLLG 710
           TGNIWTH +G
Sbjct: 261 TGNIWTHFIG 270


>SB_41241| Best HMM Match : HlyIII (HMM E-Value=1.4)
          Length = 242

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 603 YLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLL 707
           Y+H  +R P  S   C  S+F+ H ET NIW+H +
Sbjct: 52  YIHTRYRRPCLSVEQCIESMFQPHNETVNIWSHFI 86


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +3

Query: 510 EQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGN 689
           E+ EE      +    +C  +  P WLQ N ++  G+R    + S C  S+  +H E+ N
Sbjct: 310 EKDEETKENTCDLPPKLCSLQCCPSWLQFNKFVLTGYRCDY-TVSECLDSLLYVHNESVN 368

Query: 690 IWTH 701
           I++H
Sbjct: 369 IYSH 372


>SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006)
          Length = 198

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 603 YLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGL 713
           ++  G+R P  +   CF S+     ET N+WTH+L L
Sbjct: 43  FIKTGYRKPGLTMWGCFKSLIEPTNETVNVWTHVLAL 79


>SB_25466| Best HMM Match : HlyIII (HMM E-Value=1.6e-22)
          Length = 382

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 603 YLHKGHRPPLP-SFSACFASIFRIHTETGNIWTHLL 707
           ++  G+R P   S   C  + F +H ET NIW+HL+
Sbjct: 54  FILSGYRNPGNFSLRQCLVTAFSLHNETINIWSHLI 89


>SB_48981| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-25)
          Length = 471

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 550 DASHTLRTNSSACSRRYGPVLPNQSHRITRQLSKLQPFRHPTDVDPPVL 404
           + +H L +NS   S R   V PN ++++ R  + L   +H T   PP L
Sbjct: 11  EKTHRLISNSYTFSSRI--VSPNSANKVDRPANNLAKLKHNTTYRPPSL 57


>SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)
          Length = 514

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = -1

Query: 535 LRTNSS---ACSRRYGPVLPNQSHRITRQLS-KLQPFRHPTDVDPPVLKAAD 392
           L  NSS   AC R Y    P   H +   ++ KL P ++PTD   P LKAA+
Sbjct: 353 LALNSSRLEACMREYFNDYP---HEVFESIAEKLSPLKNPTDDVSPQLKAAE 401


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 257 WNLILDPKACPPMDCDAGKDGIP 325
           WN +L+P    P DCD   +G+P
Sbjct: 749 WNDVLNPLLAEPPDCDPTYEGLP 771


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 490 LPNQSHRITRQLSKLQP-FRHPTDVDPPVLKAAD 392
           L ++ H+  + + K+ P F+ P D  PP++K  D
Sbjct: 70  LEDERHKFIQDMMKINPDFKPPADYKPPLIKIQD 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,533,133
Number of Sequences: 59808
Number of extensions: 574914
Number of successful extensions: 1567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)