Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0946
         (823 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    27   0.70 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    27   0.70 
AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          26   1.6  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   4.9  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 560 HVPRRLPYFANEFLGLFAALWASAPKSISSDNTPAFKTSAISAS 429
           H P +LP+  +E L +  A   + P  I S   PAFK  A S S
Sbjct: 424 HGPIQLPHSESEELSMSTAADTAVPSGIKS---PAFKQPAFSHS 464


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 560 HVPRRLPYFANEFLGLFAALWASAPKSISSDNTPAFKTSAISAS 429
           H P +LP+  +E L +  A   + P  I S   PAFK  A S S
Sbjct: 424 HGPIQLPHSESEELSMSTAADTAVPSGIKS---PAFKQPAFSHS 464


>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 565 WHTFHDASHTLRTNSSACSRR--YGPVLPNQSHRITRQL 455
           W +F    H +R N +AC  R   GP  P+ S +  +QL
Sbjct: 63  WESFLSQFHQVRENLTACQERAAAGPA-PDPSSQFCQQL 100


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 469 ITRQLSKLQPFRHPTDVDPPVLKA 398
           I + L +LQP R   D DP VLK+
Sbjct: 363 IRKVLYRLQPSRTAQDRDPVVLKS 386


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 897,547
Number of Sequences: 2352
Number of extensions: 19418
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87318630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)