Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0946
(823 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38320.1 68417.m05416 expressed protein contains Pfam domain,... 52 5e-07
At4g37680.1 68417.m05329 expressed protein contains Pfam domain,... 52 5e-07
At4g30850.2 68417.m04378 expressed protein contains Pfam domain,... 51 8e-07
At4g30850.1 68417.m04377 expressed protein contains Pfam domain,... 51 8e-07
At2g24150.1 68415.m02885 expressed protein contains Pfam profile... 49 4e-06
At5g20270.1 68418.m02413 expressed protein contains Pfam domain,... 43 2e-04
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 31 1.2
At4g20340.1 68417.m02969 transcription initiation factor IIE (TF... 29 3.7
At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.7
At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r... 28 6.5
At1g64920.1 68414.m07359 glycosyltransferase family protein cont... 28 6.5
At4g10500.1 68417.m01722 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 8.6
>At4g38320.1 68417.m05416 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 374
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 531 RKVWE-ASWNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLL 707
+++W+ + + F LP +L+DN+Y+ +R P SIF IH ET N+WTHL+
Sbjct: 29 KRLWQKVKYQLVEFHSLPAYLRDNEYIIGHYRSEWP-IKQILLSIFTIHNETLNVWTHLI 87
Query: 708 G 710
G
Sbjct: 88 G 88
>At4g37680.1 68417.m05329 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 385
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 531 RKVWE-ASWNVCHFRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLL 707
+++W+ + + F LP +L+DN+Y+ +R P SIF IH ET N+WTHL+
Sbjct: 29 KRLWQKVKYQLVEFHSLPAYLRDNEYIIGHYRSEWP-IKQILLSIFTIHNETLNVWTHLI 87
Query: 708 G 710
G
Sbjct: 88 G 88
>At4g30850.2 68417.m04378 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 51.2 bits (117), Expect = 8e-07
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +3
Query: 567 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGLRGIHW 728
F LPR+L+DN+++H +R S F S F H ET NIWTHL G W
Sbjct: 34 FEELPRYLKDNEFIHNHYRCEW-SIKETFLSAFSWHNETLNIWTHLCGFAIFTW 86
>At4g30850.1 68417.m04377 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 51.2 bits (117), Expect = 8e-07
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +3
Query: 567 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGLRGIHW 728
F LPR+L+DN+++H +R S F S F H ET NIWTHL G W
Sbjct: 34 FEELPRYLKDNEFIHNHYRCEW-SIKETFLSAFSWHNETLNIWTHLCGFAIFTW 86
>At2g24150.1 68415.m02885 expressed protein contains Pfam profile
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 344
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +3
Query: 567 FRHLPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLGLRGIHW 728
F LP +L+DN+++H +R S F S F H ET NIWTHL+G W
Sbjct: 37 FEDLPEYLKDNEFIHNHYRCQW-SLKDTFLSAFSWHNETLNIWTHLIGFGIFLW 89
>At5g20270.1 68418.m02413 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 332
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +3
Query: 576 LPRWLQDNDYLHKGHRPPLPSFSACFASIFRIHTETGNIWTHLLG 710
LP +++DN+Y+ +R S F S+F H E+ N+WTHL+G
Sbjct: 62 LPEYMKDNEYILNYYRADW-SIRDAFFSVFSFHNESLNVWTHLIG 105
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 486 GSTGP*RREQAEEFVRKVWEASWNVCHFRHLPRWLQDNDYL 608
G G R EQA ++KVW + WN + + D+DYL
Sbjct: 1188 GDEGEQRWEQAWAAIKKVWASKWNERAYFSTRKVKLDHDYL 1228
>At4g20340.1 68417.m02969 transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general
transcription factor TFIIE family protein contains Pfam
profile: PF02002 TFIIE alpha subunit
Length = 527
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 372 EDFVELVHLRGKALRIGIPSLPASQSIGGHALGSNIRFHSHIFACFNHAKM 220
+ FV H + A R + S + G A N++FH+H + C ++A++
Sbjct: 89 QKFVMRYHRKETAKRAKMYSYAVGGTTDGRA-EDNVKFHTHSYCCLDYAQI 138
>At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to naringenin,2-oxoglutarate
3-dioxygenase [Dianthus caryophyllus][SP|Q05964],
hyoscyamine 6 beta-hydroxylase [Atropa
belladonna][gi:4996123]; contains PF03171 2OG-Fe(II)
oxygenase superfamily domain
Length = 348
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 440 WLKF*KLACYPMRLIWEHWPITPRTGRGIRSQ 535
W F +L CYP+ WP TP + R + ++
Sbjct: 130 WRDFLRLHCYPIEDFINEWPSTPISFREVTAE 161
>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
protein-related identical to cDNA bHLH transcription
factor (bHLH gamma gene) GI:32562999; weak similarity to
bHLH transcription activator anthocyanin 1 [Petunia x
hybrida] GI:10998404
Length = 720
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 532 AKYGRRRGTCAISDICHVGYKTTIIYTKDID---RLYLRSAHVLHQFSESTL 678
AK+ + GT I D HVG + ++D+D LY+++ HVL+ S S L
Sbjct: 263 AKHENQVGTNIIRDAPHVGMTSGCKDSRDLDPNLHLYMKN-HVLNDTSTSAL 313
>At1g64920.1 68414.m07359 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 452
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 690 CYLSQCGFGKLMQNMR*TKVEAVYVLCVNNRCLVANV 580
C++S CGFG + +++ + + V++ +N++ L V
Sbjct: 336 CFVSHCGFGSMWESLM-SDCQIVFIPVLNDQVLTTRV 371
>At4g10500.1 68417.m01722 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to hyoscyamine 6 beta-hydroxylase
[Atropa belladona][GI:4996123]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 349
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 440 WLKF*KLACYPMRLIWEHWPITPRTGRGIRSQ 535
W F +L C+P+ E WP +P + R + ++
Sbjct: 132 WRDFLRLHCFPIEDFIEEWPSSPISFREVTAE 163
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,439,500
Number of Sequences: 28952
Number of extensions: 396181
Number of successful extensions: 980
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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