Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0945
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    29   1.1  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   4.4  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   4.4  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   7.6  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 191 PRLCLGAVAHVHVLRLAQSEXALHERANLWSESGQ 87
           P L L AV++V    L  +E +LH+ A   SESG+
Sbjct: 709 PALSLEAVSNVSRTALEDAERSLHKSATTTSESGK 743


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 253 QLSYLGSRLRVVCCCISCSRA 191
           +L Y+GS +  VC CISC+ A
Sbjct: 147 KLVYIGSLIIYVCFCISCALA 167


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 270 TRQTLPGLNPARSYAPIGRATWSP 341
           T Q+ P  NPA   +P+G A+ SP
Sbjct: 343 TPQSSPNFNPAMRRSPVGAASRSP 366


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 392 DYEKAVSDRFPGCMRGRTMYVIPFSMGPVGSPLSKIGVESRIRL 523
           D+EK  S R   C++G T YV      P+G+ L     +  +R+
Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLLVSGSWDETVRI 164


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 647 PATLRTSSYFHKPANNEIVSLRQWI 721
           P TL+  S +H P N E++S+  W+
Sbjct: 7   PKTLK--SLWHHPHNGELISINGWV 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,279
Number of Sequences: 5004
Number of extensions: 71403
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)