Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0945
(841 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 101 1e-21
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 69 4e-12
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 64 2e-10
SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.67
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 31 0.88
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 31 1.2
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 29 3.6
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006) 29 4.7
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13) 29 4.7
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026) 29 6.2
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79) 29 6.2
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 6.2
SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4) 28 8.2
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6) 28 8.2
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 28 8.2
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 101 bits (241), Expect = 1e-21
Identities = 47/82 (57%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 TDPADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPD-YEKAVSDRFPGCMRGR 442
TDP DVARVESRTFIC+ + D VP + G+ L ++S + ++K +R+PGCM GR
Sbjct: 71 TDPQDVARVESRTFICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLYEERYPGCMTGR 129
Query: 443 TMYVIPFSMGPVGSPLSKIGVE 508
TMYV+PFSMGPVGSP+SKIG++
Sbjct: 130 TMYVLPFSMGPVGSPISKIGIQ 151
Score = 57.6 bits (133), Expect = 1e-08
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Frame = +1
Query: 469 GPCGISSLEDWCRITDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-- 642
GP G + ++TDS YVV MR+MTR+G+ VL L D FV +H+VG G
Sbjct: 139 GPVGSPISKIGIQLTDSEYVVCCMRIMTRMGSHVLKAL-GDGDFVRGVHSVGFPLKEGVK 197
Query: 643 ---WPCDPQNIVVLPQAG*QRDSKLTAVDMGGNSFVGAR 750
WPCDP+ ++ R+ K GGNS +G +
Sbjct: 198 EVPWPCDPERTLITHFPA-TREIKSYGSGYGGNSLLGKK 235
Score = 41.5 bits (93), Expect = 8e-04
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 96 LTPKVRAFVERXLALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNC 254
L KV+ FVE L P +H+CDGS+ E +A L K++NC
Sbjct: 14 LPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENC 66
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 69.3 bits (162), Expect = 4e-12
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Frame = +2
Query: 254 WLARTDPADVARVESRTFICSDRESDVVPSARAGQKSA---LGNYISPPDYEKAVSDRFP 424
++ RTDP DVARVES+TFIC++ E D VP + G+ LG ++S +A+ +RFP
Sbjct: 208 YVVRTDPGDVARVESKTFICTENERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFP 267
Query: 425 GCMRGRTMYVIPFSMGPVGSP-LSKIGVES---RIRLTWFF 535
GCM+ Y + + V P + + ES + L+W+F
Sbjct: 268 GCMKACIGYDVYQVLTDVVKPKIIVVAYESLKIKENLSWWF 308
Score = 62.5 bits (145), Expect = 4e-10
Identities = 46/126 (36%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Frame = +1
Query: 469 GPCGISSLEDWCRITDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-- 642
GP G + ++TDS YVV MR+MTR+G+ VL L Q + FV CLH+VG G
Sbjct: 323 GPVGSPIAKIGIQLTDSEYVVCCMRIMTRMGSHVLKALDQGD-FVKCLHSVGKPLKEGEK 381
Query: 643 ---WPCDPQNIVVLPQAG*QRDSKLTAVDMGGNSFVGARSAFVTSGD*LIRPFAXXLAWL 813
WPCDP ++ K GGNS +G + F + A WL
Sbjct: 382 DVLWPCDPDRTIITHFPA-DNYIKSFGSGYGGNSLLG-KKCFALR---IASNIALKEGWL 436
Query: 814 -KHMLI 828
+HMLI
Sbjct: 437 AEHMLI 442
Score = 39.9 bits (89), Expect = 0.003
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 93 TLTPKVRAFVERXLALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDN 251
+L KV+ FV + LCQP+ +H+CDGS E ++ +L K +N
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKREN 206
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +2
Query: 464 SMGPVGSPLSKIGVE 508
+MGPVGSP++KIG++
Sbjct: 321 NMGPVGSPIAKIGIQ 335
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 63.7 bits (148), Expect = 2e-10
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Frame = +1
Query: 469 GPCGISSLEDWCRITDSPYVVFSMRVMTRIGAKVLDILRQDEQFVHCLHAVGSGGTPG-- 642
GP G + +TDS YVV MR+MTR+G+ VL L D FV CLH+VG G
Sbjct: 9 GPVGSPISKIGIELTDSEYVVCCMRIMTRMGSHVLKAL-GDGDFVRCLHSVGGPLHDGKN 67
Query: 643 ---WPCDPQNIVV--LPQAG*QRDSKLTAVDMGGNSFVGAR 750
WPCDP+ ++ P+ R+ K GGNS +G +
Sbjct: 68 NVPWPCDPERTLITHFPET---REIKSYGSGYGGNSLLGKK 105
Score = 45.2 bits (102), Expect = 7e-05
Identities = 18/21 (85%), Positives = 21/21 (100%)
Frame = +2
Query: 446 MYVIPFSMGPVGSPLSKIGVE 508
MYV+PFSMGPVGSP+SKIG+E
Sbjct: 1 MYVMPFSMGPVGSPISKIGIE 21
>SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 31.9 bits (69), Expect = 0.67
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 244 YLGSRLRVVCCCISCSRALASVSEPSHTCTCSGWHRAXXRS-TNARTFGVRVVS 86
++G ++ CCCI C+ A+ + T TCS +S NA+ G ++S
Sbjct: 204 FIGIDIKKSCCCILCNSAVDINGDEEETITCSKCKITTLKSLLNAKLVGNLLIS 257
>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
Length = 619
Score = 31.5 bits (68), Expect = 0.88
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +1
Query: 319 SGE-RRGPLGSRRPEVRPGELHLPPG-----LREGRVRQIPWLHERSHNVRDT 459
SGE RRG + + E+R + P G L GRV ++PW ++SH+ DT
Sbjct: 182 SGEPRRGYDSTSQAEIRRSQ-ESPQGGGQESLSRGRVPEVPWYEDQSHHSSDT 233
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 391 RGGDVVPQGGLLAGASRGDHVALPIG 314
R GDV+P GG + RGD V + IG
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLIG 551
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 351 PARSPPWGTTSPPRITRRPCPTDSLVA--*EVAQC 449
P R P WGTT+ P T C S+V E+++C
Sbjct: 977 PTREPKWGTTAYPTSTFINCSASSVVTFKWEISKC 1011
>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
Length = 1103
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 400 EGRVRQIPWLHERSHNVRDTVLDGPCGISSLEDW 501
E ++R++ R + DTV G GI S E W
Sbjct: 304 EEKIRRVKHAKNRRKQISDTVYKGELGIGSYEPW 337
>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.1 bits (62), Expect = 4.7
Identities = 24/60 (40%), Positives = 30/60 (50%)
Frame = +2
Query: 323 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMRGRTMYVIPFSMGPVGSPLSKIG 502
ES P R Q S L N P + + +S+ R R M +I FS+GPVGS L IG
Sbjct: 51 ESSNKPPIRLKQPSQLVNL---PTH-RGMSEGETKATRMRNM-LIEFSLGPVGSTLGAIG 105
>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
Length = 774
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 237 PKYDNCGWPGQTRQTLPGLNPARSY 311
PKY NC +PG +QT+ G +S+
Sbjct: 673 PKYHNCHYPGCGKQTILGSTCGKSF 697
>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
Length = 1532
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 28 DAAAPPTKLLCEGRRSLPHS*PLSL---QRFA 114
D P T+LL +GRR PHS P S QRFA
Sbjct: 1350 DPHRPTTRLLPQGRRWRPHSRPSSAFRRQRFA 1381
>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
Length = 820
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 255 GWPGQTRQTLPGLNPARSYAP-IGRATWSPRLAPARS 362
G PGQ R+++ + P R AP I R T SPR P R+
Sbjct: 41 GTPGQRRKSV-AVTPPRLSAPHIQRGTASPRSVPPRT 76
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 279 TLPGLNP-ARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPCPTDSL 425
T+P + P + +Y P G AT+ + ++P T PP + P P L
Sbjct: 254 TIPSVPPGSETYVPPGSATYESMDSVNKAPVPPMTPPPAVVTAPPPAPPL 303
>SB_59488| Best HMM Match : Keratin_B2 (HMM E-Value=1.4)
Length = 373
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 255 GWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARS 362
G PGQ R+++ P S I R T SPR P R+
Sbjct: 41 GTPGQRRKSVAVTPPRLSTPHIQRGTASPRSVPPRT 76
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 427 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHV 329
T GHG + + GG V GG AG G HV
Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHV 351
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 285 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 407
P P + P R P P+R+ P TT PPR T P
Sbjct: 1105 PRTTPEPTTEP-SRTKPEPTTEPSRTKPEPTTEPPRTTSEP 1144
>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 302
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -1
Query: 415 VGHGLLVIRGGDVVPQGGLLAGASRGDHVALPIGAYERAGFNPGN 281
VG LL++ GG VV A A H ALP R +PGN
Sbjct: 159 VGVVLLIVNGGVVVGVECTGASAVHESHAALPALPSHRQHTSPGN 203
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 326 SDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM-RGRTMYVIPFSMGPVGS 484
S ++ + G++ LGN++ D E+ + + GC+ G + +P ++ PV +
Sbjct: 435 SRILHALNGGEQRVLGNHVDGYDPERRIIYEYMGCIWHGCSNCYLPDTVNPVNN 488
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,509,531
Number of Sequences: 59808
Number of extensions: 632483
Number of successful extensions: 1915
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1906
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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