Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0945
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    28   0.12 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   8.1  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 685 RLVEVRRCSEGRRASPECHRIRLREDNEQTARLDVEYLE 569
           R   V+R   G+  SPE  R R     EQ ARL  E+ E
Sbjct: 3   RTRRVKRSHNGKNGSPEEKRPRTAFSAEQLARLKREFAE 41


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 670 RRCSEGRRASPECHRIRLREDNEQTARLDVEYLE 569
           R    G   +PE  R R     EQ ARL  E+ E
Sbjct: 8   RSDGRGNGGTPEEKRPRTAFSGEQLARLKREFAE 41


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 75  PSPQLTTLTPKVRAFVERXLAL 140
           PSP+  T+TP+ +  + + L +
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTV 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,764
Number of Sequences: 438
Number of extensions: 5428
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)