Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0945
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24316.1 68418.m02864 proline-rich family protein contains pr...    30   1.7  
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    30   1.7  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    30   2.2  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    29   3.8  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    28   6.7  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    28   6.7  
At3g16290.1 68416.m02056 FtsH protease, putative contains simila...    28   8.9  

>At5g24316.1 68418.m02864 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 125

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 333 WSPRLAPARSPPWGTTSPPRITRRP 407
           WSPR  P R  P+    PP  TRRP
Sbjct: 95  WSPRPIPKRPMPYVPPPPPPPTRRP 119


>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 246 DNCGWPGQTRQT-LPGLNP-ARSYAPIG---RATWSPRLAPARSPPWGTTSPP 389
           D+  W    ++  LPGL    +S+ P+G    A+  P  APA+ PP     PP
Sbjct: 189 DHVEWAKALKELYLPGLREYVKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +3

Query: 237 PKYDNCGWPGQTRQTLPGLNPAR--SYAPIGRATWSPRLAPARSPPWGTTSPPRITRRPC 410
           P +     P  +    P  +PA   S++P    + SP  AP+ SP    +  P   + P 
Sbjct: 221 PSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPKSPS 280

Query: 411 PTDS 422
           P+ S
Sbjct: 281 PSSS 284


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 261 PGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRP 407
           P   +   P   P  S +P    T +P   P+ SPP  T SPP  T  P
Sbjct: 107 PAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSP 155


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 264 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 419
           G T Q  P   P  + AP    T  P   P    +PP  TTSPP +T  P P +
Sbjct: 17  GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 264 GQTRQTLPGLNPARSYAPIGRATWSPRLAP--ARSPPWGTTSPPRITRRPCPTD 419
           G T Q  P   P  + AP    T  P   P    +PP  TTSPP +T  P P +
Sbjct: 17  GVTGQA-PTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69


>At3g16290.1 68416.m02056 FtsH protease, putative contains
           similarity to cell division protein FtsH GI:1652085 from
           [Synechocystis sp. PCC 6803]
          Length = 876

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 837 CXTDKHMFQPSQSXGERANQLIPRRDESTSCPNKTVAAHIH 715
           C    H   PSQ       Q +PR   S SC N +    +H
Sbjct: 3   CRFPLHSSSPSQFLSPENRQRLPRNYPSISCQNNSATNVVH 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,426,227
Number of Sequences: 28952
Number of extensions: 423161
Number of successful extensions: 1329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)