Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0944
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    50   4e-07
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   6.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 32/77 (41%), Positives = 40/77 (51%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
           LF    ++F IGQ IQP RDLSRFV+W      Q  +++   R   K P  I  F  + L
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLR--LKVPPAIAQF-QKTL 82

Query: 350 DKTTAKGPFQRFXEKYR 400
           DK TA   F +   KYR
Sbjct: 83  DKNTATQVF-KLLNKYR 98



 Score = 33.9 bits (74), Expect = 0.031
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +3

Query: 579 IELVLFLPALCRKMGV 626
           IELV+FLPALC+KMGV
Sbjct: 160 IELVVFLPALCKKMGV 175



 Score = 33.5 bits (73), Expect = 0.040
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 538 EEGALVVIAHDVDLLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLALNK 708
           ++  LV+IA DVD +           K   PY IV    RL    H+KT   LA+ +
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTE 202


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 319 KGALFRRTLEVHPFGRLXAXYTGPSYKSGQVTSWLNPLTNSKVLXXLLEERI 164
           K  LF +    HPF R+ + ++  S      T WL   T+      + +++I
Sbjct: 77  KRFLFNKFFNRHPFTRVKSCFSSSSPSKFSFTQWLVGFTDGDGCFSISKQKI 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,706
Number of Sequences: 5004
Number of extensions: 47540
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)