Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0944
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 50 3e-06
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 50 3e-06
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 46 4e-05
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617... 31 0.92
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 31 1.2
08_02_1562 - 27881885-27881962,27882801-27882887,27883971-278840... 29 6.5
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 49.6 bits (113), Expect = 3e-06
Identities = 39/128 (30%), Positives = 59/128 (46%)
Frame = +2
Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
LF K K F IG + P +DL RFV+W + Q +R+ +R K P + F R L
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQR--LKVPPALNQF-TRTL 80
Query: 350 DKTTAKGPFQRFXEKYRA*D*SSQEREAXESC*S*GCQER*ASTKEAQHHPIRTNTVTKL 529
DK A F+ KYR D ++++ + + + + K+ N VT L
Sbjct: 81 DKNLATNLFKMLL-KYRPEDKAAKKERLLKRAQA-EAEGKTVEAKKPIVVKYGLNHVTYL 138
Query: 530 VEKKKAHL 553
+E+ KA L
Sbjct: 139 IEQSKAQL 146
Score = 45.6 bits (103), Expect = 5e-05
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 535 EEEGALVVIAHDVD---LLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLAL 702
+ + LVVIAHDVD L+ W + R K PYCIV G RL + H+KT + L L
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCR---KMEVPYCIVKGKARLGSIVHKKTASVLCL 196
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 49.6 bits (113), Expect = 3e-06
Identities = 39/128 (30%), Positives = 59/128 (46%)
Frame = +2
Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
LF K K F IG + P +DL RFV+W + Q +R+ +R K P + F R L
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQR--LKVPPALNQF-TRTL 64
Query: 350 DKTTAKGPFQRFXEKYRA*D*SSQEREAXESC*S*GCQER*ASTKEAQHHPIRTNTVTKL 529
DK A F+ KYR D ++++ + + + + K+ N VT L
Sbjct: 65 DKNLATNLFKMLL-KYRPEDKAAKKERLLKRAQA-EAEGKTVEAKKPIVVKYGLNHVTYL 122
Query: 530 VEKKKAHL 553
+E+ KA L
Sbjct: 123 IEQSKAQL 130
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 579 IELVLFLPALCRKMGV 626
IELV++LPALCRKM +
Sbjct: 140 IELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 46.0 bits (104), Expect = 4e-05
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = +1
Query: 535 EEEGALVVIAHDVD---LLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLALN 705
+ + LVVIAHDVD L+ W + R K PYCIV G RL + H+KT + L L
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCR---KMEIPYCIVKGKARLGSIVHKKTASVLCLT 182
Query: 706 KCGSSW*XXLPFSXVVGSHKDGTFKRSG*RGSFRKALGGG 825
+ L FS ++ + K + RK GGG
Sbjct: 183 TVKNE--DKLEFSKILEAIKSNFNDKF---DEVRKKWGGG 217
Score = 41.9 bits (94), Expect = 6e-04
Identities = 26/62 (41%), Positives = 31/62 (50%)
Frame = +2
Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
LF K K F IG + P +DL RFVRW Q +RV +R K P + F R L
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQR--LKVPPALNQF-TRTL 81
Query: 350 DK 355
DK
Sbjct: 82 DK 83
>04_04_1357 +
32860677-32860781,32861484-32861588,32861678-32861728,
32861829-32861949,32862495-32862616,32863032-32863133,
32863226-32863300,32863391-32863470,32863601-32863751,
32863850-32864080,32864221-32864517,32864638-32864751,
32864857-32865030
Length = 575
Score = 31.5 bits (68), Expect = 0.92
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -3
Query: 283 PFGRLXAXYTGPSYKSGQVTSWLNPLTNSKVLXXLLEERIHDLLGLNXFDH 131
P+ L + YK+ V+ LNP+ N + ++E+ +HD+L L +DH
Sbjct: 464 PYVVLSLKKSKTKYKTRVVSESLNPVWN-QTFDFVVEDGLHDMLMLEVYDH 513
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 241 KSGQVTSWLNPLTNSKVLXXLLEERIHDLLGLNXFDHQWXG 119
K+ VT LNP+ N + ++E+ +HDLL + +DH G
Sbjct: 471 KTRVVTETLNPIWN-QTFDFVVEDALHDLLMVEVWDHDTFG 510
>08_02_1562 -
27881885-27881962,27882801-27882887,27883971-27884048,
27884100-27884267,27884353-27884465,27885360-27885684
Length = 282
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 843 VXRRNPAAPKCFAEAPSLAAPFESSVFMASNDXRERKPRSP 721
V RR P P A A+PF +++ ++S+ + +PR P
Sbjct: 25 VRRRVPRPPLVAASRHCTASPFPTTISISSSGLGQARPRDP 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,018,514
Number of Sequences: 37544
Number of extensions: 355867
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -