Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0944
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        42   5e-04
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           29   4.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 42/128 (32%), Positives = 56/128 (43%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
           L  K  +NF IG  IQP RDLSRFVRW      Q  K + ++R   K P  I  F  + L
Sbjct: 31  LIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQR--LKVPPAINQF-TQAL 87

Query: 350 DKTTAKGPFQRFXEKYRA*D*SSQEREAXESC*S*GCQER*ASTKEAQHHPIRTNTVTKL 529
           D+ +    F +   KYR    + ++             +  A  K+        N +T L
Sbjct: 88  DRQSTVQLF-KLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSL 146

Query: 530 VEKKKAHL 553
           VE KKA L
Sbjct: 147 VENKKAQL 154



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +1

Query: 538 EEGALVVIAHDVDLLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLAL 702
           ++  LVVIAHDVD +           K   PYCIV G  RL    H+K  T L +
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCI 204


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +1

Query: 538 EEGALVVIAHDVDLLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLAL 702
           ++  LVVIAHDVD +           K   PYCIV G  RL    H+K  T L +
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCI 113


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 488 PLWWRLIFLGNLSFSSFXQPLFPG 417
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,236,564
Number of Sequences: 59808
Number of extensions: 386042
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)