Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0944
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    56   4e-08
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    48   9e-06
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    48   1e-05
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    43   3e-04
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 40/128 (31%), Positives = 60/128 (46%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
           LF K  +NF IGQ IQP +D++RFV+W      Q    +  KR   K P  I  F    L
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR--LKVPPTINQFRTA-L 88

Query: 350 DKTTAKGPFQRFXEKYRA*D*SSQEREAXESC*S*GCQER*ASTKEAQHHPIRTNTVTKL 529
           D  +A+  F +  +KYR     +++        +    ++   TK         NT+T+L
Sbjct: 89  DSQSARQAF-KLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRL 147

Query: 530 VEKKKAHL 553
           VE ++A L
Sbjct: 148 VETRRAQL 155



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 550 LVVIAHDVDLLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLAL 702
           LV+IAHDV+ L           K+  PY I+ G   L     RKT   +AL
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 205


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 30/77 (38%), Positives = 40/77 (51%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
           LF K  +NF IGQ IQP +D++RFV+W      Q    +  KR   K P  I  F    L
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR--LKVPPTINQFRTA-L 88

Query: 350 DKTTAKGPFQRFXEKYR 400
           D  +A+  F +  +KYR
Sbjct: 89  DSQSARQAF-KLLDKYR 104



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 550 LVVIAHDVDLLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLAL 702
           LV+IAHDV+ L           K+  PY I+ G   L     RKT   +AL
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVAL 185


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 30/77 (38%), Positives = 40/77 (51%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
           LF K  +NF IGQ IQP +D++RFV+W      Q    +  KR   K P  I  F    L
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR--LKVPPTINQFRTA-L 191

Query: 350 DKTTAKGPFQRFXEKYR 400
           D  +A+  F +  +KYR
Sbjct: 192 DSHSARQAF-KLLDKYR 207


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKR 298
           LF K  +NF IGQ IQP +D++RFV+W      Q    +  KR
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKR 177


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 754 GSHKDGTFKRSG*RGSFRKALGG 822
           GSH+DG     G RGSFR   GG
Sbjct: 72  GSHRDGQEGSRGNRGSFRGGRGG 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,073
Number of Sequences: 27780
Number of extensions: 281059
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)