Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0944
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            51   9e-07
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    48   6e-06
At1g05500.1 68414.m00561 C2 domain-containing protein similar to...    31   1.0  
At5g11100.1 68418.m01296 C2 domain-containing protein similar to...    29   4.1  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 38/100 (38%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
 Frame = +1

Query: 535 EEEGALVVIAHDVD---LLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLALN 705
           + +  LVVIAHDVD   L+ W  +  R   K   PYCIV G  RL A  H+KT +CL L 
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCR---KMEVPYCIVKGKSRLGAVVHQKTASCLCLT 196

Query: 706 KCGSSW*XXLPFSXVVGSHKDGTFKRSG*RGSFRKALGGG 825
              +     L FS ++ + K   F        +RK  GGG
Sbjct: 197 TVKNE--DKLEFSKILEAIK-ANFNDK--YEEYRKKWGGG 231



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 37/128 (28%), Positives = 61/128 (47%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
           LF +  K F IG  + P +DLSR+++W      Q  KR+  +R   K P  +  F  + L
Sbjct: 23  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQR--LKVPPALNQF-TKTL 79

Query: 350 DKTTAKGPFQRFXEKYRA*D*SSQEREAXESC*S*GCQER*ASTKEAQHHPIRTNTVTKL 529
           DK  A   F +   KYR  D ++++    +   +   + + + +K+        N VT L
Sbjct: 80  DKNLATSLF-KVLLKYRPEDKAAKKERLVKKAQA-EAEGKPSESKKPIVVKYGLNHVTYL 137

Query: 530 VEKKKAHL 553
           +E+ KA L
Sbjct: 138 IEQNKAQL 145


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 38/128 (29%), Positives = 60/128 (46%)
 Frame = +2

Query: 170 LFXKXXKNFAIGQGIQPTRDLSRFVRWXSIXGXQAAKRVYFKRPSEKCPLRIKPFYPRHL 349
           LF +  K F IG  + P +DLSR+++W      Q  KR+  +R   K P  +  F  + L
Sbjct: 22  LFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQR--LKVPPALNQF-TKTL 78

Query: 350 DKTTAKGPFQRFXEKYRA*D*SSQEREAXESC*S*GCQER*ASTKEAQHHPIRTNTVTKL 529
           DK  A   F +   KYR  D ++++        +   + + A +K+        N VT L
Sbjct: 79  DKNLATSLF-KILLKYRPEDKAAKKERLLNKAQA-EAEGKPAESKKPIVVKYGLNHVTYL 136

Query: 530 VEKKKAHL 553
           +E+ KA L
Sbjct: 137 IEQNKAQL 144



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 37/100 (37%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = +1

Query: 535 EEEGALVVIAHDVD---LLSWFSSCQRYAVKWVXPYCIVXGNXRLXAFYHRKTCTCLALN 705
           + +  LVVIAHDVD   L+ W  +  R   K   PYCIV G  RL A  H+KT   L L 
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCR---KMEVPYCIVKGKSRLGAVVHQKTAAALCLT 195

Query: 706 KCGSSW*XXLPFSXVVGSHKDGTFKRSG*RGSFRKALGGG 825
              +     L FS ++ + K   F        +RK  GGG
Sbjct: 196 TVKNE--DKLEFSKILEAIK-ANFNDK--YEEYRKKWGGG 230


>At1g05500.1 68414.m00561 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 528

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 283 PFGRLXAXYTGPSYKSGQVTSWLNPLTNSKVLXXLLEERIHDLLGLNXFDHQWXG 119
           P+  L    +G   K+  V   LNP+ N +    ++E+ +HD+L L  +DH   G
Sbjct: 426 PYVVLSMKKSGAKSKTRVVNDSLNPVWN-QTFDFVVEDGLHDMLVLEVWDHDTFG 479


>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 574

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 241 KSGQVTSWLNPLTNSKVLXXLLEERIHDLLGLNXFDHQWXG 119
           K+  V   LNP+ N +    ++E+ +HDLL L  +DH   G
Sbjct: 485 KTRVVPDSLNPVWN-QTFDFVVEDALHDLLTLEVWDHDKFG 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,959
Number of Sequences: 28952
Number of extensions: 272448
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)