Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0942
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_716| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.51 
SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)                   29   3.6  

>SB_716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 474 LNKNCTNHYKFQVKKYNVLNPLVRYMGEYPYYTRDRNRVI*I-CVIRAPCYKEDYCIIQY 650
           L +   NHY+   KK +V NP+  Y G  P +    N V+ + C  R P Y+   C    
Sbjct: 114 LMRKTANHYQGSSKKVDVFNPITGYRGNSPKF----NIVLGLSCQPRDPSYEPIRCKTDL 169

Query: 651 P 653
           P
Sbjct: 170 P 170


>SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)
          Length = 334

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +3

Query: 342 YKYNINKKITDVFAIQKLGTQILXXXXXXXYNNTFGTMCKDTTKLNKNCTNHYKFQVKKY 521
           Y Y     I ++ +I   G+ I         + T  T   D T L K C++H+K+ V + 
Sbjct: 78  YNYITTSMICELNSIGVSGSLIEQLEQMEPASKTVFTQVLDQTMLFKQCSDHFKYGVTQN 137

Query: 522 NVLNPLVRYMGEYPYY 569
            +      +   YP Y
Sbjct: 138 GLYYLQDTHHNWYPVY 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091,372
Number of Sequences: 59808
Number of extensions: 415855
Number of successful extensions: 687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)