Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0942
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = -3

Query: 644 DNTVILLITRRSYNAYSYYAISVPRIIRVFPHIPDEGI*HVIF 516
           + T+I  +    +NA  Y +   P +++ F ++P + +   +F
Sbjct: 302 EETIISSVFTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLF 344


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = -3

Query: 644 DNTVILLITRRSYNAYSYYAISVPRIIRVFPHIPDEGI*HVIF 516
           + T+I  +    +NA  Y +   P +++ F ++P + +   +F
Sbjct: 8   EETIISSVFTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLF 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,319
Number of Sequences: 438
Number of extensions: 5232
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)