Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0939
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-6|AAC26288.1|  199|Caenorhabditis elegans Hypothetical ...    32   0.58 
U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.        28   9.4  
AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protei...    28   9.4  

>AF077534-6|AAC26288.1|  199|Caenorhabditis elegans Hypothetical
           protein K07D4.4 protein.
          Length = 199

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 553 ENYFLSILHPITLVYVLSLKIQLFCNFIVEYFI*SNTLAVIVIMSNFDGFL 705
           E YF +IL       +L  K+Q FC FI+ +F    T AV+ + S  + F+
Sbjct: 13  EEYFQNILLHFNFQIILGHKMQSFCPFIILFF----TFAVLCVKSQDEVFI 59


>U58085-1|AAC47122.1|  780|Caenorhabditis elegans CUL-3 protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 453 HTHLALVVYRDIFMYLVLLFLVERNH 376
           HT +A+V+ RDI MY+  +++ + NH
Sbjct: 109 HT-VAMVMIRDILMYMDRIYVAQNNH 133


>AC024744-3|AAK72067.1|  777|Caenorhabditis elegans Cullin protein 3
           protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 453 HTHLALVVYRDIFMYLVLLFLVERNH 376
           HT +A+V+ RDI MY+  +++ + NH
Sbjct: 109 HT-VAMVMIRDILMYMDRIYVAQNNH 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,128
Number of Sequences: 27780
Number of extensions: 314386
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)