Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0939
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 50  VKFSITCDVIAR*C---TYFKRILFFFFNKKNTS 142
           ++ + T DVIAR      YF  + FFF + K TS
Sbjct: 456 IRVAKTIDVIARITFPVAYFMFLTFFFIHYKGTS 489


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 50  VKFSITCDVIAR*C---TYFKRILFFFFNKKNTS 142
           ++ + T DVIAR      YF  + FFF + K TS
Sbjct: 442 IRVAKTIDVIARITFPVAYFMFLTFFFIHYKGTS 475


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 50  VKFSITCDVIAR*C---TYFKRILFFFFNKKNTS 142
           ++ + T DVIAR      YF  + FFF + K TS
Sbjct: 476 IRVAKTIDVIARITFPVAYFMFLTFFFIHYKGTS 509


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 50  VKFSITCDVIAR*C---TYFKRILFFFFNKKNTS 142
           ++ + T DVIAR      YF  + FFF + K TS
Sbjct: 425 IRVAKTIDVIARITFPVAYFMFLTFFFIHYKGTS 458


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 84  RAITSHVIENLTNFND 37
           +A T +++ENL N+ND
Sbjct: 58  KARTFNLVENLDNYND 73


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -1

Query: 290 MIHIYITVYII*FLEIEFMTFFTKIVMVVNWQHVR 186
           +++ ++TV  I  +  E MT+   I +  +W+  R
Sbjct: 31  IVYFHVTVLSIDSINEESMTYVADIFLAQSWRDSR 65


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 84  RAITSHVIENLTNFND 37
           +A T +++ENL N+ND
Sbjct: 58  KARTFNLVENLDNYND 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,729
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)