Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0938
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    82   1e-16
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    27   4.3  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   7.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   7.5  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   10.0 
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   10.0 
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   10.0 

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 40/86 (46%), Positives = 52/86 (60%)
 Frame = +3

Query: 249 CDLFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPL 428
           C L F L +  +YG  +F      +T IFAI  Y  SGLGITAG HRLW+H++YKA+ PL
Sbjct: 67  CMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPL 124

Query: 429 RILLTIFNTIAFQDAVVDWARDHRMH 506
              L      AF+ ++  W+RDHR H
Sbjct: 125 EYFLAAGGAAAFEGSIRWWSRDHRAH 150



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 22/66 (33%), Positives = 45/66 (68%)
 Frame = +2

Query: 509 KYSETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQIL 688
           +Y++TD DP+N  +GF+++H+GW+++ ++P    +    DV+DL +DP + F  +++   
Sbjct: 152 RYTDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHF--- 205

Query: 689 MPLAXF 706
           +P+A F
Sbjct: 206 LPIASF 211


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +2

Query: 551 GFFFS-HIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQILMPLAXF-HHAYIC 724
           GF F+ H+   L ++HP+ + K   +D N L++  +     +   + + +    HH Y  
Sbjct: 66  GFEFAQHLQSYLAQQHPDWETKVIKIDANPLKSKHLETATARIMGMDIDIVNLRHHDYTN 125

Query: 725 TNIVGEKQFGILSTSCGKFXLTYNGPQYN 811
           +N   +  FG       +   T N   YN
Sbjct: 126 SNSSNKLVFGTPLEDALRRDATINALFYN 154


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 506 PKYSETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKK 673
           P  S T  D H+    +  S++G    RK P  K +G+    ++   D IL  +KK
Sbjct: 8   PGNSSTVGDVHDVFFEYDVSNVG----RKRPRTKEEGYYESESEEDEDQILNKEKK 59


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 530 PHRSLNILVHAMITGPIHYGILKSDSIEYGE*YSQWQP 417
           P + L++L H   T  IH+     + ++ G   +QWQP
Sbjct: 520 PDKPLSLLKHGK-TKMIHFDGANEEEVDAGINMAQWQP 556


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 506 PKYSETDADPHNATRGFFFSHIGWLLL 586
           P+++E+    + AT+  F+ H+G LLL
Sbjct: 383 PEFAESTYYLYRATKDVFYLHVGELLL 409


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 127 QRKQEASWVLYEADANNLPEDAPPHVPPSAEKRPWKI-VWRN 249
           QR+ E+++ L E D     E +    PP + K P  +  W N
Sbjct: 11  QRRDESAYRLGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSN 52


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 365 QSRTQVQKYGEYRSPPHGFEKEQVPSINT-TDMQNKEQITFLHTIFQGLFSAEGG 204
           +SR+   + G     P   EKE++ +INT  D+ N E   F +   + LF A+ G
Sbjct: 5   KSRSSSTRKGSSLKVPEIKEKEKINAINTYEDVANSED-EFYNAQDKILFDADNG 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,880,544
Number of Sequences: 5004
Number of extensions: 91494
Number of successful extensions: 246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)