Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0938
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 31 0.85
05_07_0334 - 29358823-29360247 31 0.85
06_03_0002 - 15280292-15281550,15282714-15282840 31 1.5
11_01_0535 + 4234282-4235082 30 2.0
10_08_0445 + 17989438-17990895 29 3.4
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 29 4.5
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819... 29 6.0
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 28 7.9
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562... 28 7.9
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 31.5 bits (68), Expect = 0.85
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 338 HIFVLVFGIGYNSWRAQT-LGTQVL*SSAATENITHHIQYYRFSGCRSG 481
H+F F YN W + + G ++ A ENI + QY RF G ++G
Sbjct: 57 HLFESGFMPSYNCWTSHSEQGVEMEEDEAQDENIPNWAQYARFEGNQTG 105
>05_07_0334 - 29358823-29360247
Length = 474
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 536 GGPHRSLNILVHAMITGPIHYGILKSDSIEYGE*YSQWQPSFIGLVCP 393
GG ++SL + V A +G I G+L SD Y S + S G CP
Sbjct: 190 GGGYKSLVVYVEACESGSIFEGLLPSDISVYATTASNAEESSWGTYCP 237
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 196 PHVPPSAEKRP---WKIVWRNVICSLFCMSVVFMEGTCSF 306
P PP A++RP + +WR V+ C+S+V CS+
Sbjct: 140 PPAPPGAKRRPVRPLRSLWRVVLLCTECLSLVRSAAVCSY 179
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 318 WRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLP 425
W + +A FLY C LG A RLW + + P
Sbjct: 220 WTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYP 255
>10_08_0445 + 17989438-17990895
Length = 485
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +1
Query: 163 ADANNL-PEDAPPHV--PPSAEKRPWK 234
A A N+ P +PPHV PP+ +RPW+
Sbjct: 407 ATATNMTPPPSPPHVRAPPAPARRPWR 433
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 260 LYSACRWCLWRVLVPFQSHVEDFYIRHIFVLVFGIGYNSW 379
L S CRWCL P Q+++ED + F+ V G SW
Sbjct: 695 LTSHCRWCL--TGTPLQNNLEDLFSLLCFLHVEPWGDASW 732
>02_05_0327 +
27980841-27980972,27981673-27981763,27981848-27981900,
27981990-27982154,27982544-27982662,27982880-27982997,
27983096-27983173,27983326-27983424
Length = 284
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 229 WKIVWRNVICSLFCMSVVFMEGTCSFSKPCGGLLY 333
W ++W N S+ +S +F+ G SFS G LLY
Sbjct: 151 WALLWHNPNPSMIVLSKLFIAG-LSFSAALGFLLY 184
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -3
Query: 338 GEYRSPPHGFEKEQVPSINTTDMQNKEQI 252
G +R+P +G+E+ VP++ +N E++
Sbjct: 463 GSFRTPHNGYEEVHVPALKAKPYENGEKV 491
>03_02_0101 -
5623661-5623669,5623756-5624408,5624504-5624640,
5626032-5626609
Length = 458
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 279 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 386
G GY L+ +W T + A+ L + LG+ G H
Sbjct: 97 GAAAGYQLLWLLLWATVMGALVQLLSARLGVATGKH 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,939,150
Number of Sequences: 37544
Number of extensions: 629945
Number of successful extensions: 1698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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