Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0938
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               93   3e-19
SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   30   2.6  
SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76)                  30   2.6  
SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)                   29   6.1  
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)                 29   6.1  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
 Frame = +2

Query: 509 KYSETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQIL 688
           KYSETDADPHNA RGFFFSH+GWL+ RKHP++  KG  +D++DL  D ++ FQ+++Y+ +
Sbjct: 67  KYSETDADPHNAKRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVMFQRRHYKKI 126

Query: 689 MPLAXFHHAYICTNIVGEKQFGILSTSCG-KFXLTYN 796
             L       +  ++ GE  +    TS   ++ +T N
Sbjct: 127 SMLMCVLIPTLVPSLWGESLWNAYFTSFALRYVITLN 163



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
 Frame = +3

Query: 345 LYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHQNIQRP 524
           L LC G G+T GAHRLWAH+++KA+ PLR+++ + N++A Q+ + +W+RDHR+H      
Sbjct: 12  LSLCRGYGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSET 71

Query: 525 MRTPTTQPEDSSFPTLAGCC*GSIPK--SKPKAIPST*MICAMILSYVFRRSTTKF*CL* 698
              P        F  +        P    K K I  + +    ++  +F+R   K   + 
Sbjct: 72  DADPHNAKRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVV--MFQRRHYKKISML 129

Query: 699 PXFIMPTYVPTLWGRN 746
              ++PT VP+LWG +
Sbjct: 130 MCVLIPTLVPSLWGES 145


>SB_12261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 637 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 533
           ++H V G  FG DF       PAN G E S  C VG
Sbjct: 339 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 374


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 637 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 533
           ++H V G  FG DF       PAN G E S  C VG
Sbjct: 305 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 340


>SB_44412| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 632

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 637 IIH-VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 533
           ++H V G  FG DF       PAN G E S  C VG
Sbjct: 541 VVHGVRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 576


>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
          Length = 390

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -1

Query: 628 VDGMAFGFDFGMLPQQQPANVGKEESSGCVVG 533
           V G  FG DF       PAN G E S  C VG
Sbjct: 155 VRGGVFGEDFAQHLAPNPANTGDEASYDCGVG 186


>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
          Length = 514

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 417 RLPLRILLTIFNTIAFQDAVVDWARDHRMHQNIQ 518
           R+PLR  LT + T  F    V W+R+H  + +IQ
Sbjct: 150 RMPLRRQLTPYKT--FTSKAVTWSRNHSRNMSIQ 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,595,136
Number of Sequences: 59808
Number of extensions: 716055
Number of successful extensions: 1761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1758
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)