Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0937
         (836 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C4U5 Cluster: SJCHGC08462 protein; n=1; Schistosoma j...    36   1.7  
UniRef50_UPI0000D55BD1 Cluster: PREDICTED: similar to CG7015-PA;...    35   2.2  
UniRef50_A4VF57 Cluster: Axonemal dynein light intermediate poly...    34   3.8  
UniRef50_Q8CEH0 Cluster: Adult male hippocampus cDNA, RIKEN full...    33   8.9  

>UniRef50_Q5C4U5 Cluster: SJCHGC08462 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC08462 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 225

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
 Frame = -2

Query: 601 YFS*VFCIR----VKNLFYYQYITVNFMVSQFNLQDYKAL--IKSYL*SLRSREHNVPMR 440
           +FS ++ IR    VKNL  Y +I   +  +Q ++Q+  +   + S++ + R  E  +P  
Sbjct: 6   FFSQIYFIRYDIAVKNLKRY-FINCIYSFNQLSIQNNSSQSNLHSFISNGRQNETKIPKA 64

Query: 439 L*PFNTHQNHYCCKIKLCTLNCVKLNPQMSSMLAESELRDALARLQTIIKS 287
           +   N H  H    + L  L C+KL P +  +   S+    L+ + T++KS
Sbjct: 65  I--SNRHHCHAYDTVPLDKLECLKLIPSVQMLNKSSDANSELSNV-TLLKS 112


>UniRef50_UPI0000D55BD1 Cluster: PREDICTED: similar to CG7015-PA;
           n=3; Endopterygota|Rep: PREDICTED: similar to CG7015-PA
           - Tribolium castaneum
          Length = 910

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 604 MSSNPQWKMFQPPDSHSSPLQDILDLQHSNMQHKSS 711
           MS+NPQWK FQPPD+ +     I+D +      K+S
Sbjct: 1   MSTNPQWKSFQPPDTMNQD-SAIIDFKPMTSNGKAS 35


>UniRef50_A4VF57 Cluster: Axonemal dynein light intermediate
           polypeptide, putative; n=3; Oligohymenophorea|Rep:
           Axonemal dynein light intermediate polypeptide, putative
           - Tetrahymena thermophila SB210
          Length = 260

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
 Frame = -2

Query: 571 KNLFYYQYITVNFMVSQFNLQDYKALIKSYL*SLRSREHNV-PMRL*PFNTHQNHYCCKI 395
           KN  YY+       VS+F+LQD +  +   L   ++R++ + P+R    + H   +   I
Sbjct: 84  KNNEYYKANVSADEVSRFDLQDLEETLNKKLRLRQARKNGICPVR---EDLHNQLFDEII 140

Query: 394 KLCTLNCVKLNPQMSSMLAESELRDALARLQTIIKSCCYLHVCKSILQEQD 242
           + CT+NC +    +  +     LR   A  QT+ +      V K++  E+D
Sbjct: 141 RQCTINCPERG--LLLLRVRDNLRMTFAAYQTLYQGSVVFGVRKALQAEKD 189


>UniRef50_Q8CEH0 Cluster: Adult male hippocampus cDNA, RIKEN
           full-length enriched library, clone:2900001H06
           product:sodium channel, voltage-gated, type I, beta
           polypeptide, full insert sequence; n=1; Mus
           musculus|Rep: Adult male hippocampus cDNA, RIKEN
           full-length enriched library, clone:2900001H06
           product:sodium channel, voltage-gated, type I, beta
           polypeptide, full insert sequence - Mus musculus (Mouse)
          Length = 101

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 720 WYLQPVSTPSSPS-GYYKWWVPNPVVGNR 803
           W  QP+  PS P+ G   WWVP+P  G++
Sbjct: 33  WKSQPLRVPSRPAVGISPWWVPSPGSGDQ 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,205,623
Number of Sequences: 1657284
Number of extensions: 17067463
Number of successful extensions: 36726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36717
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)