Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0937
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.3  
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    26   7.6  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    26   7.6  
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    26   7.6  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 709  SYRNGTYSQ*VPQVLXRDIINGGFQIQWW 795
            SY+N   SQ +P +L   +I G F+  W+
Sbjct: 1127 SYKNKVMSQMIPHLLLLQLIAGNFEGFWY 1155


>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 376 CVKLNPQMSSMLAESELRDALARLQTIIKSCCYLHVCKSILQEQDDASDGRS 221
           C K +  MS    E    + L R+ TII++     +    L  Q D +DG+S
Sbjct: 45  CKKADIDMSKRAGELTTEE-LERIVTIIQNPSQFKIPSWFLNRQKDINDGKS 95


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 591 RFFV*ESKICFITNISQLILWC---HNLIYRITKL 496
           R F+    ICF+ +I Q +++C   +NL+ +I ++
Sbjct: 133 RGFINTGNICFMNSILQALMYCVPFYNLLKQINRM 167


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 376 CVKLNPQMSSMLAESELRDALARLQTIIKSCCYLHVCKSILQEQDDASDGRS 221
           C K +  MS    E    + L R+ TII++     +    L  Q D +DG+S
Sbjct: 45  CKKADIDMSKRAGELTTEE-LERIVTIIQNPSQFKIPSWFLNRQKDINDGKS 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,551,285
Number of Sequences: 5004
Number of extensions: 74431
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)