Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0937
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.66 
SB_10543| Best HMM Match : Ank (HMM E-Value=0.0069)                    29   4.7  
SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037)                28   8.2  

>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 546 SQLILWCHNLIYRITKL*SNHIYKVCVHANIMYQCDCDHLIHTK 415
           SQL+L   +  Y+ TK  S H++ VCVH N+ YQ   + +  T+
Sbjct: 28  SQLVLM--DATYKTTKY-SLHLFFVCVHTNVGYQVIAEFICETE 68


>SB_10543| Best HMM Match : Ank (HMM E-Value=0.0069)
          Length = 171

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +1

Query: 547 YIGNKTDF*LLYKKPKKNIMSSNPQWKMFQPPDSHSSPLQDILDLQHSNMQHKSSYRNGT 726
           Y  N T F   +  P + +M S    K ++   +   P+Q   +  HS++    +Y  G+
Sbjct: 88  YCVNSTSFFSFFVTPSRRLMPSRTTLKDYEKNSNGKRPVQLAKESGHSDILKLVNYDYGS 147

Query: 727 YSQ*VP 744
           Y+  +P
Sbjct: 148 YTFPLP 153


>SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037)
          Length = 284

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 675 RSPALQHAAQIFVS*WYLQPVSTPSSPSGYYKWWVPNPVVGNRFSRXGXQCW 830
           RSPA  +A + FVS W LQP         + ++W+ +  +  R    G   W
Sbjct: 86  RSPARTNAHKSFVSKWELQPA------GHFSRFWIQSVDMNGRRKSSGGDTW 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,582,024
Number of Sequences: 59808
Number of extensions: 571796
Number of successful extensions: 1269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)