Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0937
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    29   5.4  

>Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical
           protein T19B10.9 protein.
          Length = 588

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 550 IGNKTDF*LLYKKPKKNIMSSNPQWKMFQPPDSHSSP-LQDILDLQHSNMQHKSSYRNGT 726
           +G  TD   +   P+K      P      PP   S P L D +D+   N Q  ++YR+ T
Sbjct: 71  LGTGTDQLEMINSPEKKNNDITPYPGYIAPPPEPSFPTLIDSVDVPRVNQQSSNTYRSET 130

Query: 727 YSQ*VPQVLXRDI 765
             Q + Q   RD+
Sbjct: 131 PLQLLSQDTRRDL 143


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 607 SSNPQWKMFQPPDSHSSPLQDILDLQHSNMQHKSSYRN 720
           S +P    + P    ++PLQ   D Q+  M H+ S++N
Sbjct: 149 SCSPPQYYYSPTQPSAAPLQGSCDPQYQQMYHQHSHQN 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,959,973
Number of Sequences: 27780
Number of extensions: 430425
Number of successful extensions: 1024
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)