Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0937
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein bet...    29   3.8  
At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family prote...    28   6.7  
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    28   8.8  

>At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein
           beta-xylosidase, Hypocrea jecorina, EMBL:Z69257
          Length = 773

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 253 VISTYKRADSNTILLLSATEPMHHGAPIQQAL 348
           V +T  RA S+T+ L + T P  HG+PI+Q L
Sbjct: 687 VKNTGDRAGSHTVFLFT-TSPQVHGSPIKQLL 717


>At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family protein
           Contains PF 00561 alpha/beta hydrolase fold
          Length = 648

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -1

Query: 257 ITRARRCIRRTFYILSLLSR*VPPTDRPICINYNDVRNV*NYLNCSHKCEYC 102
           + +ARRC+R  F+++++L+  +  +  P+ +   DV  V ++L  S  C  C
Sbjct: 8   VEKARRCLRTVFFMVAMLAS-LLVSSLPLLVAIGDVL-VPSFLLSSFTCVTC 57


>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 637 PPDSHSSPLQDILDLQHSN 693
           PPD HS P  D + LQH+N
Sbjct: 129 PPDIHSLPSLDYIYLQHNN 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,250,750
Number of Sequences: 28952
Number of extensions: 381736
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)