Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0936
(869 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000515DAB Cluster: PREDICTED: similar to Polyadenyl... 94 5e-18
UniRef50_Q86U42 Cluster: Polyadenylate-binding protein 2 (Poly(A... 75 2e-12
UniRef50_Q93233 Cluster: Putative uncharacterized protein pabp-2... 63 1e-08
UniRef50_Q4SI21 Cluster: Chromosome 5 SCAF14581, whole genome sh... 59 2e-07
UniRef50_UPI0000D9F28C Cluster: PREDICTED: similar to poly(A)bin... 57 5e-07
UniRef50_A6NDY0 Cluster: Uncharacterized protein ENSP00000367609... 54 5e-06
UniRef50_Q5KLP3 Cluster: Poly(A) binding protein, putative; n=1;... 54 5e-06
UniRef50_O14327 Cluster: Polyadenylate-binding protein 2 (Poly(A... 54 6e-06
UniRef50_UPI0000546443 Cluster: PREDICTED: hypothetical protein;... 51 3e-05
UniRef50_Q2GTP8 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_UPI00005A0D8A Cluster: PREDICTED: similar to poly(A)bin... 48 3e-04
UniRef50_Q9P4V6 Cluster: RNA-binding protein; n=3; Saccharomycet... 48 4e-04
UniRef50_Q5XFR0 Cluster: Embryonic polyadenylate-binding protein... 48 4e-04
UniRef50_A3M0M8 Cluster: Predicted protein; n=2; Pichia|Rep: Pre... 46 0.001
UniRef50_Q9LU62 Cluster: Similarity to poly(A)-binding protein I... 46 0.002
UniRef50_A7QT53 Cluster: Chromosome undetermined scaffold_165, w... 44 0.004
UniRef50_A2YAR8 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_A5E774 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_Q6CQW2 Cluster: Similarities with sp|Q8J1F4 Ashbya goss... 42 0.015
UniRef50_Q09301 Cluster: Putative RNA-binding protein EEED8.12; ... 42 0.015
UniRef50_Q76P06 Cluster: Putative uncharacterized protein; n=2; ... 40 0.082
UniRef50_Q5CFP8 Cluster: Poly(A) binding protein II; n=2; Crypto... 39 0.19
UniRef50_Q8I2R8 Cluster: RNA-binding protein, putative; n=5; Pla... 38 0.25
UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 37 0.58
UniRef50_A5DYR4 Cluster: Putative uncharacterized protein; n=5; ... 37 0.58
UniRef50_Q4UCX7 Cluster: RNA poly(A)-binding protein, putative; ... 36 1.0
UniRef50_O44530 Cluster: Putative uncharacterized protein; n=1; ... 35 2.3
UniRef50_Q76IQ0 Cluster: Putative uncharacterized protein SGN1; ... 35 3.1
UniRef50_A7P538 Cluster: Chromosome chr4 scaffold_6, whole genom... 34 4.1
UniRef50_P40561 Cluster: RNA-binding protein SGN1; n=2; Saccharo... 34 4.1
UniRef50_Q8J1F4 Cluster: Yib1; n=1; Eremothecium gossypii|Rep: Y... 34 5.4
>UniRef50_UPI0000515DAB Cluster: PREDICTED: similar to
Polyadenylate-binding protein 2 (Poly(A)-binding protein
2) (PolyA binding protein II) (PABII)
(Polyadenylate-binding nuclear protein 1) (Nuclear
poly(A)-binding protein 1); n=2; Coelomata|Rep:
PREDICTED: similar to Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (PolyA binding protein II)
(PABII) (Polyadenylate-binding nuclear protein 1)
(Nuclear poly(A)-binding protein 1) - Apis mellifera
Length = 228
Score = 93.9 bits (223), Expect = 5e-18
Identities = 49/95 (51%), Positives = 57/95 (60%)
Frame = +2
Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITSPLNMSIXXXIEADXXSVMXVXLIM 529
IKARVREME EAEKLKQ+Q+EVDK M MGSPPGITSPLNMS+ +E D S+ +
Sbjct: 50 IKARVREMEEEAEKLKQLQSEVDKQMNMGSPPGITSPLNMSLEDKMEVDNRSIYVGNVDY 109
Query: 530 XPRLRSWSSTFMVVGLXPGLQXYAISYDGHPKGFA 634
F G + +DGHPKGFA
Sbjct: 110 GATAEELEQHFHGCGSVNRVTILCNKFDGHPKGFA 144
>UniRef50_Q86U42 Cluster: Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (Poly(A)- binding protein
II) (PABII) (Polyadenylate-binding nuclear protein 1)
(Nuclear poly(A)-binding protein 1); n=58;
Coelomata|Rep: Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (Poly(A)- binding protein
II) (PABII) (Polyadenylate-binding nuclear protein 1)
(Nuclear poly(A)-binding protein 1) - Homo sapiens
(Human)
Length = 306
Score = 75.4 bits (177), Expect = 2e-12
Identities = 41/95 (43%), Positives = 51/95 (53%)
Frame = +2
Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITSPLNMSIXXXIEADXXSVMXVXLIM 529
IKARVREME EAEKLK++Q EV+K M M PPG P+ MSI +EAD S+ +
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 181
Query: 530 XPRLRSWSSTFMVVGLXPGLQXYAISYDGHPKGFA 634
+ F G + + GHPKGFA
Sbjct: 182 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFA 216
>UniRef50_Q93233 Cluster: Putative uncharacterized protein pabp-2;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein pabp-2 - Caenorhabditis elegans
Length = 205
Score = 62.9 bits (146), Expect = 1e-08
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAM 681
G VDYG TAEE+EQHFHGCGS+ RVT+ C++ PK F +G+ + AM
Sbjct: 83 GNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAM 138
>UniRef50_Q4SI21 Cluster: Chromosome 5 SCAF14581, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 5 SCAF14581, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 172
Score = 58.8 bits (136), Expect = 2e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFC 633
G VDYG TA+ELE HF+GCG + RVT+LC++ PK FC
Sbjct: 63 GNVDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKGFC 102
Score = 33.9 bits (74), Expect = 5.4
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Frame = +2
Query: 350 IKARVR--EMEXEAEKLKQ-MQTEVDKXMXMGSPPGITSPLNMSIXXXIEADXXSVMXVX 520
IKARV+ EME E E+LK+ + E + M P NM+ I+AD SV
Sbjct: 5 IKARVQELEMEEETERLKEDERCEAGELQLMTCSPRPGPFYNMTPEERIDADNRSVYVGN 64
Query: 521 LIMXPRLRSWSSTFMVVGLXPGLQXYAISYDGHPKGFAXHRNLATKGSCPGLQWA 685
+ F G + + GHPKGF R + S P + A
Sbjct: 65 VDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKGFCP-RGQICQASAPQTEGA 118
>UniRef50_UPI0000D9F28C Cluster: PREDICTED: similar to
poly(A)binding protein nuclear-like 1; n=2; Theria|Rep:
PREDICTED: similar to poly(A)binding protein
nuclear-like 1 - Macaca mulatta
Length = 241
Score = 57.2 bits (132), Expect = 5e-07
Identities = 27/51 (52%), Positives = 33/51 (64%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
G VDYG +AEELE HF GCG + RVT+LC+K PK + EF +G V
Sbjct: 165 GNVDYGGSAEELEAHFSGCGEVHRVTILCDKFSGHPKGYAY-IEFATKGSV 214
>UniRef50_A6NDY0 Cluster: Uncharacterized protein ENSP00000367609;
n=5; Catarrhini|Rep: Uncharacterized protein
ENSP00000367609 - Homo sapiens (Human)
Length = 278
Score = 54.0 bits (124), Expect = 5e-06
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
G VDYG +AEELE HF CG + RVT+LC+K PK + EF +G V
Sbjct: 152 GNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAY-IEFATKGSV 201
>UniRef50_Q5KLP3 Cluster: Poly(A) binding protein, putative; n=1;
Filobasidiella neoformans|Rep: Poly(A) binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 210
Score = 54.0 bits (124), Expect = 5e-06
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
G VDYG T EE++ HF CG+I RVT+LC+K PK + EF + IV
Sbjct: 98 GNVDYGATPEEIQAHFQACGTINRVTILCDKFTGHPKGYAY-VEFAEPSIV 147
>UniRef50_O14327 Cluster: Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (Poly(A)- binding protein
II); n=22; Eukaryota|Rep: Polyadenylate-binding protein
2 (Poly(A)-binding protein 2) (Poly(A)- binding protein
II) - Schizosaccharomyces pombe (Fission yeast)
Length = 166
Score = 53.6 bits (123), Expect = 6e-06
Identities = 26/59 (44%), Positives = 33/59 (55%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAMGXG 690
G VDY T EEL+ HF CGS+ RVT+LC+K PK F EF + +V + G
Sbjct: 60 GNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAY-IEFSEPSLVPNALLLNG 117
>UniRef50_UPI0000546443 Cluster: PREDICTED: hypothetical protein;
n=3; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 163
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/56 (50%), Positives = 35/56 (62%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAM 681
G VDYG TA+ELE +F+ CG + RVT+ N+ PK F EF D+ V RTAM
Sbjct: 42 GNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAY-IEFSDRESV-RTAM 95
>UniRef50_Q2GTP8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 250
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSR 672
G VDY + EEL+ HF CGSI RVT+L +K PK + EF + +V++
Sbjct: 132 GNVDYSTSPEELQAHFQSCGSINRVTILLDKFTGQPKGYAY-VEFSEPNLVAQ 183
>UniRef50_UPI00005A0D8A Cluster: PREDICTED: similar to
poly(A)binding protein nuclear-like 1; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to poly(A)binding
protein nuclear-like 1 - Canis familiaris
Length = 122
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +1
Query: 520 VDYGXTAEELEQHFHGCGSIXRVTVLCNK 606
VDYG TAEELE +F+ CG + RVT+LC+K
Sbjct: 26 VDYGSTAEELEAYFNPCGEVHRVTILCDK 54
>UniRef50_Q9P4V6 Cluster: RNA-binding protein; n=3;
Saccharomycetales|Rep: RNA-binding protein - Candida
boidinii (Yeast)
Length = 255
Score = 47.6 bits (108), Expect = 4e-04
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
G +DY T +EL++HF CGSI R+T+ NK PK F EF D V
Sbjct: 129 GNLDYAATPDELQKHFESCGSINRITIPTNKFTGNPKGFAY-IEFSDASYV 178
>UniRef50_Q5XFR0 Cluster: Embryonic polyadenylate-binding protein 2
(Embryonic poly(A)-binding protein 2) (Embryonic
poly(A)-binding protein type II) (ePABP2)
(Poly(A)-binding protein nuclear-like 1); n=10;
Amniota|Rep: Embryonic polyadenylate-binding protein 2
(Embryonic poly(A)-binding protein 2) (Embryonic
poly(A)-binding protein type II) (ePABP2)
(Poly(A)-binding protein nuclear-like 1) - Mus musculus
(Mouse)
Length = 273
Score = 47.6 bits (108), Expect = 4e-04
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
G VDYG +A ELE +F CG I RVT+LC+K PK +
Sbjct: 148 GNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGY 186
>UniRef50_A3M0M8 Cluster: Predicted protein; n=2; Pichia|Rep:
Predicted protein - Pichia stipitis (Yeast)
Length = 217
Score = 46.4 bits (105), Expect = 0.001
Identities = 24/47 (51%), Positives = 27/47 (57%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGD 654
G VDYG T EL+QHF G + RVT+L NK PK F EF D
Sbjct: 94 GNVDYGSTPLELQQHFSSAGIVKRVTILTNKFTGQPKGFAY-LEFDD 139
>UniRef50_Q9LU62 Cluster: Similarity to poly(A)-binding protein II;
n=17; Magnoliophyta|Rep: Similarity to poly(A)-binding
protein II - Arabidopsis thaliana (Mouse-ear cress)
Length = 267
Score = 45.6 bits (103), Expect = 0.002
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
G VDY T EE++QHF CG++ RVT+L +K PK F
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGF 145
>UniRef50_A7QT53 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 209
Score = 44.4 bits (100), Expect = 0.004
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNK 606
G VDY T EE++QHF CG++ RVT+ NK
Sbjct: 39 GNVDYSCTPEEVQQHFQACGTVNRVTIRSNK 69
>UniRef50_A2YAR8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 234
Score = 44.0 bits (99), Expect = 0.005
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 520 VDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
VDY T EE++QHF+ CG++ RVT+L +K PK F
Sbjct: 131 VDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGF 166
Score = 33.1 bits (72), Expect = 9.4
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +2
Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITSPLNMS 472
+K R++EME EA L++MQT+V K M + + S LN++
Sbjct: 38 MKRRLKEMEEEANALREMQTKVAKEMQGCNLLVLISSLNLA 78
>UniRef50_A5E774 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 334
Score = 44.0 bits (99), Expect = 0.005
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPK 624
G VDYG T EL+QHF CG I +VT+L NK PK
Sbjct: 191 GNVDYGSTPLELQQHFSLCGIIEKVTILNNKFTGRPK 227
>UniRef50_Q6CQW2 Cluster: Similarities with sp|Q8J1F4 Ashbya
gossypii Yib1; n=1; Kluyveromyces lactis|Rep:
Similarities with sp|Q8J1F4 Ashbya gossypii Yib1 -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 345
Score = 42.3 bits (95), Expect = 0.015
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
G + TAE LE+HF CG + RVT+L NKL PK +
Sbjct: 108 GNITTEATAETLEEHFKDCGEVVRVTILYNKLTGAPKGY 146
>UniRef50_Q09301 Cluster: Putative RNA-binding protein EEED8.12;
n=4; Caenorhabditis|Rep: Putative RNA-binding protein
EEED8.12 - Caenorhabditis elegans
Length = 197
Score = 42.3 bits (95), Expect = 0.015
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAMGXG 690
G VD+ T EE+E+HF GCG I R T+ +K K F EF D + + G
Sbjct: 66 GNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAY-IEFDDSSSIENALVMNG 123
>UniRef50_Q76P06 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum (Slime mold)
Length = 246
Score = 39.9 bits (89), Expect = 0.082
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAM 681
G VDY T +++ +F CG++ R+T+L +K PK C + I++ A+
Sbjct: 130 GNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMAL 185
>UniRef50_Q5CFP8 Cluster: Poly(A) binding protein II; n=2;
Cryptosporidium|Rep: Poly(A) binding protein II -
Cryptosporidium hominis
Length = 263
Score = 38.7 bits (86), Expect = 0.19
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
G VDYG EL+ F CGSI R+T++ +K PK F
Sbjct: 116 GNVDYGTKLTELQDLFKSCGSINRITIMNDKRTGMPKGF 154
>UniRef50_Q8I2R8 Cluster: RNA-binding protein, putative; n=5;
Plasmodium|Rep: RNA-binding protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 202
Score = 38.3 bits (85), Expect = 0.25
Identities = 25/56 (44%), Positives = 29/56 (51%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAM 681
G VDY EEL+ F CG I RVT+L NK K + EF D V RTA+
Sbjct: 76 GNVDYSTQPEELQSLFSECGLINRVTILVNKNTGHSKGYAY-IEFADASSV-RTAL 129
>UniRef50_A5BD07 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 1350
Score = 37.1 bits (82), Expect = 0.58
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -3
Query: 282 FIEPLVPSKYCCQSSLKNHHFLPFPPSVEIMNYI 181
F PL+PS+ C +L++HH LP+ SV ++NY+
Sbjct: 380 FSGPLLPSEVCFLXALEHHHQLPWLMSVVVVNYV 413
>UniRef50_A5DYR4 Cluster: Putative uncharacterized protein; n=5;
Saccharomycetales|Rep: Putative uncharacterized protein
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 224
Score = 37.1 bits (82), Expect = 0.58
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
G VDY T E++E+ FH G + RVT+L +K PK +
Sbjct: 71 GNVDYQSTPEQIEELFHKVGIVERVTILFDKFSGLPKGY 109
>UniRef50_Q4UCX7 Cluster: RNA poly(A)-binding protein, putative;
n=3; Piroplasmida|Rep: RNA poly(A)-binding protein,
putative - Theileria annulata
Length = 176
Score = 36.3 bits (80), Expect = 1.0
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAM 681
G VDY +EL++ F G I R+T++ +K PK + EF ++ V+ M
Sbjct: 47 GNVDYSTKPQELQEFFKSSGQINRITIMVDKYTGHPKGYAY-VEFSNEDAVNNAIM 101
>UniRef50_O44530 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 177
Score = 35.1 bits (77), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
G VD+ T E+E+HF CG + RVT+ +K K F
Sbjct: 51 GNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNF 89
>UniRef50_Q76IQ0 Cluster: Putative uncharacterized protein SGN1;
n=1; Candida glabrata|Rep: Putative uncharacterized
protein SGN1 - Candida glabrata (Yeast) (Torulopsis
glabrata)
Length = 144
Score = 34.7 bits (76), Expect = 3.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNK 606
G + T EE+++HF CG I R+T+L +K
Sbjct: 50 GNISLDTTPEEIDEHFKSCGVIKRITMLYDK 80
>UniRef50_A7P538 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 213
Score = 34.3 bits (75), Expect = 4.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +1
Query: 433 GKPXRNNQSIKHVYRXXNRSRXXISNXGXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL* 612
GKP ++ +++H ++N V + T E L HF CG + V +L ++
Sbjct: 29 GKPDLSSSTLRHPEEDIEPRTVYVTN---VHFAATKEALSNHFAKCGLVVNVVILTDETI 85
Query: 613 WPPKR 627
PKR
Sbjct: 86 AQPKR 90
>UniRef50_P40561 Cluster: RNA-binding protein SGN1; n=2;
Saccharomyces cerevisiae|Rep: RNA-binding protein SGN1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 250
Score = 34.3 bits (75), Expect = 4.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 463 KHVYRXXNRSRXXISNXGXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
KH ++ SR G + T E++E HF CG I R+T+L ++ PK +
Sbjct: 54 KHAHQLEADSRSIF--VGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGY 107
>UniRef50_Q8J1F4 Cluster: Yib1; n=1; Eremothecium gossypii|Rep: Yib1
- Ashbya gossypii (Yeast) (Eremothecium gossypii)
Length = 324
Score = 33.9 bits (74), Expect = 5.4
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 535 TAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
TAE LE+HF G I R+T+L NK PK +
Sbjct: 95 TAEMLEEHFKDVGVISRITILYNKKTGEPKGY 126
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,244,691
Number of Sequences: 1657284
Number of extensions: 7979363
Number of successful extensions: 14671
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 14367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14655
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77472727479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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