Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0936
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      54   3e-08
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   3.5  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    26   8.0  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    26   8.0  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 26/59 (44%), Positives = 33/59 (55%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIVSRTAMGXG 690
           G VDY  T EEL+ HF  CGS+ RVT+LC+K    PK F    EF +  +V    +  G
Sbjct: 60  GNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAY-IEFSEPSLVPNALLLNG 117


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 123 QVIQFITTNXTVFKLQSVXELHKITI*XKIFT 28
           +V  F  T  TVFK++ V  LH++ +   IFT
Sbjct: 293 KVANFWCTLNTVFKIREVFTLHQLQVISLIFT 324


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 279 IEPLVPSKYCCQSSLKNHHFLPFPPS 202
           I+    +KY  +  L +H  LP+PPS
Sbjct: 351 IQTRTVAKYLVEIGLLDHKLLPYPPS 376


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQ 657
           G + +  T E++   F  CG I R+ +  ++    P  FC    F +Q
Sbjct: 37  GNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQ 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,194
Number of Sequences: 5004
Number of extensions: 32615
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)