Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0936
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0815 + 6166861-6166953,6167074-6167173,6168569-6168639,616...    46   4e-05
02_05_0810 - 31934965-31935013,31935096-31935217,31935328-319355...    46   4e-05
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753...    28   8.5  

>06_01_0815 +
           6166861-6166953,6167074-6167173,6168569-6168639,
           6169873-6170064,6170168-6170290
          Length = 192

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
           G VDY  T EE++QHF+ CG++ RVT+L +K    PK F
Sbjct: 87  GNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGF 124



 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +2

Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITS 457
           +K R++EME EA  L++MQT+V K M  G  P  +S
Sbjct: 38  MKRRLKEMEEEANALREMQTKVAKEM-QGLDPNASS 72


>02_05_0810 -
           31934965-31935013,31935096-31935217,31935328-31935519,
           31937689-31937759,31938708-31938819,31938911-31939015
          Length = 216

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 24/51 (47%), Positives = 31/51 (60%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
           G VDY  T EE++QHF  CG++ RVT+L +K    PK F    EF +Q  V
Sbjct: 95  GNVDYACTPEEVQQHFQACGTVNRVTILTDKF-GQPKGFAY-VEFLEQEAV 143



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 29/95 (30%), Positives = 38/95 (40%)
 Frame = +2

Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITSPLNMSIXXXIEADXXSVMXVXLIM 529
           +K R++EME EA  L+ MQ +V K M  G P G  S         ++A    V  V    
Sbjct: 42  MKRRLKEMEEEAAALRDMQAKVAKEMQGGPPGGDPSASTAEAKEQVDARSVYVGNVDYAC 101

Query: 530 XPRLRSWSSTFMVVGLXPGLQXYAISYDGHPKGFA 634
            P        F   G    +      + G PKGFA
Sbjct: 102 TP--EEVQQHFQACGTVNRVTILTDKF-GQPKGFA 133


>04_03_0282 -
           13874547-13874738,13875047-13875134,13875222-13875328,
           13875487-13875542,13875853-13875882,13877397-13877505,
           13877774-13878318,13879584-13879668,13879753-13879914,
           13880293-13880434,13880524-13880624,13882307-13882489
          Length = 599

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 520 VDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPK 624
           V +  T E L  HF  CG++ ++ +L + +   PK
Sbjct: 472 VHFAATKEALSGHFMKCGTVLKINILTDAISGHPK 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,096,732
Number of Sequences: 37544
Number of extensions: 216691
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)