Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0936
         (869 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010939-1|AAH10939.1|  306|Homo sapiens poly(A) binding protein...    75   3e-13
AF026029-1|AAC39596.1|  306|Homo sapiens poly(A) binding protein...    75   3e-13
BC130001-1|AAI30002.1|  255|Homo sapiens LOC390748 protein protein.    54   9e-07

>BC010939-1|AAH10939.1|  306|Homo sapiens poly(A) binding protein,
           nuclear 1 protein.
          Length = 306

 Score = 75.4 bits (177), Expect = 3e-13
 Identities = 41/95 (43%), Positives = 51/95 (53%)
 Frame = +2

Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITSPLNMSIXXXIEADXXSVMXVXLIM 529
           IKARVREME EAEKLK++Q EV+K M M  PPG   P+ MSI   +EAD  S+    +  
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 181

Query: 530 XPRLRSWSSTFMVVGLXPGLQXYAISYDGHPKGFA 634
                   + F   G    +      + GHPKGFA
Sbjct: 182 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFA 216


>AF026029-1|AAC39596.1|  306|Homo sapiens poly(A) binding protein II
           protein.
          Length = 306

 Score = 75.4 bits (177), Expect = 3e-13
 Identities = 41/95 (43%), Positives = 51/95 (53%)
 Frame = +2

Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITSPLNMSIXXXIEADXXSVMXVXLIM 529
           IKARVREME EAEKLK++Q EV+K M M  PPG   P+ MSI   +EAD  S+    +  
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDY 181

Query: 530 XPRLRSWSSTFMVVGLXPGLQXYAISYDGHPKGFA 634
                   + F   G    +      + GHPKGFA
Sbjct: 182 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFA 216


>BC130001-1|AAI30002.1|  255|Homo sapiens LOC390748 protein protein.
          Length = 255

 Score = 53.6 bits (123), Expect = 9e-07
 Identities = 23/40 (57%), Positives = 27/40 (67%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFC 633
           G VDYG +AEELE HF  CG + RVT+LC+K    PK  C
Sbjct: 152 GNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGCC 191


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,423,800
Number of Sequences: 237096
Number of extensions: 1257989
Number of successful extensions: 1865
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1855
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)