Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0936
         (869 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34934-1|AAA73522.1|  224|Drosophila melanogaster RNA binding pr...    65   1e-10
AY075519-1|AAL68327.1|  224|Drosophila melanogaster RE69521p pro...    65   1e-10
AY070631-1|AAL48102.1|  224|Drosophila melanogaster RE74211p pro...    65   1e-10
AF116341-1|AAF00976.1|  224|Drosophila melanogaster poly(A)-bind...    65   1e-10
AE013599-599|AAM68852.1|  224|Drosophila melanogaster CG2163-PB,...    65   1e-10
AE013599-598|AAF59127.1|  224|Drosophila melanogaster CG2163-PA,...    65   1e-10
L23873-1|AAA28862.1|   48|Drosophila melanogaster Rox2 protein.        62   7e-10
AY118351-1|AAM48380.1|  182|Drosophila melanogaster LP11479p pro...    29   8.3  
AE014296-161|AAF47434.1|  841|Drosophila melanogaster CG13908-PA...    29   8.3  

>L34934-1|AAA73522.1|  224|Drosophila melanogaster RNA binding
           protein protein.
          Length = 224

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
           G VDYG +AEELE HFHGCG+I RVT+LCNK    PK F    EFG +  V
Sbjct: 101 GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAY-IEFGSKEFV 150



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/126 (35%), Positives = 58/126 (46%)
 Frame = +2

Query: 257 LEGTNGSMNMTDNSXXXXXXXXXXXXXXXXXIKARVREMEXEAEKLKQMQTEVDKXMXMG 436
           LE TNG    T+ +                 IKARV+EME EAEK+KQMQ+EVDK M  G
Sbjct: 17  LEETNGEQE-TEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMRGG 75

Query: 437 SPPGITSPLNMSIXXXIEADXXSVMXVXLIMXPRLRSWSSTFMVVGLXPGLQXYAISYDG 616
           S  G+ + + +S+    E D  SV    +          + F   G    +       DG
Sbjct: 76  STTGLAT-VPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADG 134

Query: 617 HPKGFA 634
           HPKGFA
Sbjct: 135 HPKGFA 140


>AY075519-1|AAL68327.1|  224|Drosophila melanogaster RE69521p
           protein.
          Length = 224

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
           G VDYG +AEELE HFHGCG+I RVT+LCNK    PK F    EFG +  V
Sbjct: 101 GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAY-IEFGSKEFV 150



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/126 (35%), Positives = 58/126 (46%)
 Frame = +2

Query: 257 LEGTNGSMNMTDNSXXXXXXXXXXXXXXXXXIKARVREMEXEAEKLKQMQTEVDKXMXMG 436
           LE TNG    T+ +                 IKARV+EME EAEK+KQMQ+EVDK M  G
Sbjct: 17  LEETNGEQE-TEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGG 75

Query: 437 SPPGITSPLNMSIXXXIEADXXSVMXVXLIMXPRLRSWSSTFMVVGLXPGLQXYAISYDG 616
           S  G+ + + +S+    E D  SV    +          + F   G    +       DG
Sbjct: 76  STTGLAT-VPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADG 134

Query: 617 HPKGFA 634
           HPKGFA
Sbjct: 135 HPKGFA 140


>AY070631-1|AAL48102.1|  224|Drosophila melanogaster RE74211p
           protein.
          Length = 224

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
           G VDYG +AEELE HFHGCG+I RVT+LCNK    PK F    EFG +  V
Sbjct: 101 GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAY-IEFGSKEFV 150



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/126 (35%), Positives = 58/126 (46%)
 Frame = +2

Query: 257 LEGTNGSMNMTDNSXXXXXXXXXXXXXXXXXIKARVREMEXEAEKLKQMQTEVDKXMXMG 436
           LE TNG    T+ +                 IKARV+EME EAEK+KQMQ+EVDK M  G
Sbjct: 17  LEETNGEQE-TEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGG 75

Query: 437 SPPGITSPLNMSIXXXIEADXXSVMXVXLIMXPRLRSWSSTFMVVGLXPGLQXYAISYDG 616
           S  G+ + + +S+    E D  SV    +          + F   G    +       DG
Sbjct: 76  STTGLAT-VPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADG 134

Query: 617 HPKGFA 634
           HPKGFA
Sbjct: 135 HPKGFA 140


>AF116341-1|AAF00976.1|  224|Drosophila melanogaster poly(A)-binding
           protein II protein.
          Length = 224

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
           G VDYG +AEELE HFHGCG+I RVT+LCNK    PK F    EFG +  V
Sbjct: 101 GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAY-IEFGSKEFV 150



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/126 (35%), Positives = 58/126 (46%)
 Frame = +2

Query: 257 LEGTNGSMNMTDNSXXXXXXXXXXXXXXXXXIKARVREMEXEAEKLKQMQTEVDKXMXMG 436
           LE TNG    T+ +                 IKARV+EME EAEK+KQMQ+EVDK M  G
Sbjct: 17  LEETNGEQE-TEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGG 75

Query: 437 SPPGITSPLNMSIXXXIEADXXSVMXVXLIMXPRLRSWSSTFMVVGLXPGLQXYAISYDG 616
           S  G+ + + +S+    E D  SV    +          + F   G    +       DG
Sbjct: 76  STTGLAT-VPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADG 134

Query: 617 HPKGFA 634
           HPKGFA
Sbjct: 135 HPKGFA 140


>AE013599-599|AAM68852.1|  224|Drosophila melanogaster CG2163-PB,
           isoform B protein.
          Length = 224

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
           G VDYG +AEELE HFHGCG+I RVT+LCNK    PK F    EFG +  V
Sbjct: 101 GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAY-IEFGSKEFV 150



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/126 (35%), Positives = 58/126 (46%)
 Frame = +2

Query: 257 LEGTNGSMNMTDNSXXXXXXXXXXXXXXXXXIKARVREMEXEAEKLKQMQTEVDKXMXMG 436
           LE TNG    T+ +                 IKARV+EME EAEK+KQMQ+EVDK M  G
Sbjct: 17  LEETNGEQE-TEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGG 75

Query: 437 SPPGITSPLNMSIXXXIEADXXSVMXVXLIMXPRLRSWSSTFMVVGLXPGLQXYAISYDG 616
           S  G+ + + +S+    E D  SV    +          + F   G    +       DG
Sbjct: 76  STTGLAT-VPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADG 134

Query: 617 HPKGFA 634
           HPKGFA
Sbjct: 135 HPKGFA 140


>AE013599-598|AAF59127.1|  224|Drosophila melanogaster CG2163-PA,
           isoform A protein.
          Length = 224

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRFCLPSEFGDQGIV 666
           G VDYG +AEELE HFHGCG+I RVT+LCNK    PK F    EFG +  V
Sbjct: 101 GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAY-IEFGSKEFV 150



 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 45/126 (35%), Positives = 58/126 (46%)
 Frame = +2

Query: 257 LEGTNGSMNMTDNSXXXXXXXXXXXXXXXXXIKARVREMEXEAEKLKQMQTEVDKXMXMG 436
           LE TNG    T+ +                 IKARV+EME EAEK+KQMQ+EVDK M  G
Sbjct: 17  LEETNGEQE-TEIATEVEEEGSMQIDPELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGG 75

Query: 437 SPPGITSPLNMSIXXXIEADXXSVMXVXLIMXPRLRSWSSTFMVVGLXPGLQXYAISYDG 616
           S  G+ + + +S+    E D  SV    +          + F   G    +       DG
Sbjct: 76  STTGLAT-VPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADG 134

Query: 617 HPKGFA 634
           HPKGFA
Sbjct: 135 HPKGFA 140


>L23873-1|AAA28862.1|   48|Drosophila melanogaster Rox2 protein.
          Length = 48

 Score = 62.5 bits (145), Expect = 7e-10
 Identities = 27/39 (69%), Positives = 30/39 (76%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
           G VDYG +AEELE HFHGCG+I RVT+LCNK    PK F
Sbjct: 5   GNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGF 43


>AY118351-1|AAM48380.1|  182|Drosophila melanogaster LP11479p
           protein.
          Length = 182

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 574 THNHESAAPAPQPWXHNQXYXHY 506
           T  H S+ P+PQP  H+Q   H+
Sbjct: 57  TSEHSSSLPSPQPLTHHQQLHHF 79


>AE014296-161|AAF47434.1|  841|Drosophila melanogaster CG13908-PA
           protein.
          Length = 841

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 574 THNHESAAPAPQPWXHNQXYXHY 506
           T  H S+ P+PQP  H+Q   H+
Sbjct: 716 TSEHSSSLPSPQPLTHHQQLHHF 738


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,412,224
Number of Sequences: 53049
Number of extensions: 378010
Number of successful extensions: 757
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)