Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0936
         (869 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51120.1 68418.m06339 polyadenylate-binding protein, putative...    46   4e-05
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr...    45   8e-05
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr...    42   5e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr...    42   5e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    30   2.3  
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    29   5.3  
At4g01950.1 68417.m00260 phospholipid/glycerol acyltransferase f...    28   9.3  

>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
           PABP, putative contains similarity to poly(A)-binding
           protein II [Mus musculus] GI:2351846; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 227

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
           G VDY  T EE++QHF  CG++ RVT+L +K    PK F
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGF 145


>At5g65260.1 68418.m08209 polyadenylate-binding protein family
           protein / PABP family protein low similarity to
           poly(A)-binding protein II [Drosophila melanogaster]
           GI:6007612; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain
          Length = 220

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 20/39 (51%), Positives = 26/39 (66%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
           G VDY  T EE++QHF  CG++ RVT+L +K    PK F
Sbjct: 97  GNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGF 134



 Score = 35.9 bits (79), Expect = 0.035
 Identities = 28/95 (29%), Positives = 41/95 (43%)
 Frame = +2

Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPPGITSPLNMSIXXXIEADXXSVMXVXLIM 529
           +K R++EME EA  L++MQ +V+K M    P  I +  N +    ++A    V  V    
Sbjct: 46  MKKRLKEMEDEAAALREMQAKVEKEMGAQDPASIAA--NQAGKEEVDARSVFVGNVDYAC 103

Query: 530 XPRLRSWSSTFMVVGLXPGLQXYAISYDGHPKGFA 634
            P        F   G    +      + G PKGFA
Sbjct: 104 TP--EEVQQHFQTCGTVHRVTILTDKF-GQPKGFA 135


>At5g10350.2 68418.m01201 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 202

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
           G VDY  T EE++ HF  CG++ RVT+L +K    PK F
Sbjct: 94  GNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGF 131



 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPP 445
           +K R++EME EA  L++MQ +V+K M     P
Sbjct: 42  MKRRLKEMEEEAAALREMQAKVEKEMGATQDP 73


>At5g10350.1 68418.m01200 polyadenylate-binding protein family
           protein / PABP family protein contains weak similarity
           to poly(A) binding protein II from [Mus musculus]
           GI:2351846, [Xenopus laevis] GI:11527140; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 217

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +1

Query: 514 GXVDYGXTAEELEQHFHGCGSIXRVTVLCNKL*WPPKRF 630
           G VDY  T EE++ HF  CG++ RVT+L +K    PK F
Sbjct: 94  GNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGF 131



 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 350 IKARVREMEXEAEKLKQMQTEVDKXMXMGSPP 445
           +K R++EME EA  L++MQ +V+K M     P
Sbjct: 42  MKRRLKEMEEEAAALREMQAKVEKEMGATQDP 73


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 520 VDYGXTAEELEQHFHGCGSIXRVTVLCNK 606
           V+   T EEL +HF  CG+I    ++C++
Sbjct: 311 VNVAVTEEELRKHFSQCGTITSTKLMCDE 339


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 254 YLEGTNGSMNMTDNSXXXXXXXXXXXXXXXXXIKARVREMEXEAEKLK-QMQTEVDKXMX 430
           YL   NG ++ T +S                  K ++      A+K K + + EVD+   
Sbjct: 170 YLSNPNGGISTTSSSCLISSSHGGIPAPKKRGRKTKINNDAAVAKKRKIERKEEVDRFAR 229

Query: 431 MGSPPGITSPLNMSI 475
           + +P G+ + LN  I
Sbjct: 230 LAAPSGLLNELNPGI 244


>At4g01950.1 68417.m00260 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 520

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 103 CYELYYLSRSTIS*WXXLPXSKVISKYIIHD 195
           C E+Y++ +S    W  LP S+     I HD
Sbjct: 226 CQEIYFVKKSDKRSWQTLPRSQYPKPLIFHD 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,143
Number of Sequences: 28952
Number of extensions: 175759
Number of successful extensions: 360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)