BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0932 (868 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 4.6 SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 26 8.0 >SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9 |Schizosaccharomyces pombe|chr 2|||Manual Length = 673 Score = 26.6 bits (56), Expect = 4.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +1 Query: 373 KFNITPLEACENAHIFCMNSITM 441 +FN T L C+N H++ S+TM Sbjct: 601 QFNNTSLATCDNGHVWRRCSVTM 623 >SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosaccharomyces pombe|chr 2|||Manual Length = 585 Score = 25.8 bits (54), Expect = 8.0 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = +1 Query: 301 IKRQHPNIDKLSHDQLKYTIQILNKFNI-TPLEACENA-HIFCMNSI 435 +KR N + HD+L YTI N+ + T E ENA ++ ++S+ Sbjct: 317 LKRFKYNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSV 363 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,625,210 Number of Sequences: 5004 Number of extensions: 75794 Number of successful extensions: 143 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 143 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 432473040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -