Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0932
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   4.6  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   8.0  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 373 KFNITPLEACENAHIFCMNSITM 441
           +FN T L  C+N H++   S+TM
Sbjct: 601 QFNNTSLATCDNGHVWRRCSVTM 623


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 301 IKRQHPNIDKLSHDQLKYTIQILNKFNI-TPLEACENA-HIFCMNSI 435
           +KR   N  +  HD+L YTI   N+  + T  E  ENA  ++ ++S+
Sbjct: 317 LKRFKYNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSV 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,625,210
Number of Sequences: 5004
Number of extensions: 75794
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)