Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0932
         (868 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         29   3.7  
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_6710| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.5  

>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 271  QNLSSTCLEKIKRQHPNIDKLSHDQLKYTIQILNKFNITPL-EACENAHIF 420
            +NL  TC+ +  ++  ++  +S  + ++  Q+L+ +N+T + + CEN + F
Sbjct: 1024 KNLKETCVGRWWKEIKSLAGVSKKESRWYSQLLDAYNVTTVAQLCENINDF 1074


>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 459 FKRMSIHQNYNQTHYXIHTLVRSRTIAKLKKGWF 560
           +K + IH N N  H+  H L   R +A++++ WF
Sbjct: 458 YKIIFIH-NQNHNHFCCHVLKVRRALARMREVWF 490


>SB_6710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 241 ILRSTQQITGQNLSSTC--LEKIKRQHPNIDKLSHDQLKYTIQIL----NKFNITPLEAC 402
           +L +TQQ T  +++STC   + ++  H  I ++S DQ  Y   +     +KF  + L A 
Sbjct: 37  LLLNTQQATTSHVTSTCTGTQDLRDSHIAISRISDDQGFYAHPLSTIDHSKFFFSTLSA- 95

Query: 403 ENAHIFCMN 429
           +NA   C N
Sbjct: 96  QNAATGCPN 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,895,418
Number of Sequences: 59808
Number of extensions: 529211
Number of successful extensions: 959
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)