Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0932
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF248052-1|AAF62184.1|  280|Caenorhabditis elegans MEI-2 protein.      34   0.15 
AF039713-9|AAB96729.1|  280|Caenorhabditis elegans Defective mei...    34   0.15 
U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AF248052-1|AAF62184.1|  280|Caenorhabditis elegans MEI-2 protein.
          Length = 280

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +1

Query: 298 KIKRQHPNIDK-LSHD-QLKYT-IQILNKFNITPLEACENAHIFCMNSITMDNYGE 456
           K+K    N+++ LS+D QL  T I+ILN  N   L +C     F M +IT DNYG+
Sbjct: 139 KMKSFTSNMEQILSNDNQLAPTVIRILNSRNSWCLNSCHACLTFIMENITSDNYGK 194


>AF039713-9|AAB96729.1|  280|Caenorhabditis elegans Defective
           meiosis protein 2 protein.
          Length = 280

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +1

Query: 298 KIKRQHPNIDK-LSHD-QLKYT-IQILNKFNITPLEACENAHIFCMNSITMDNYGE 456
           K+K    N+++ LS+D QL  T I+ILN  N   L +C     F M +IT DNYG+
Sbjct: 139 KMKSFTSNMEQILSNDNQLAPTVIRILNSRNSWCLNSCHACLTFIMENITSDNYGK 194


>U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical
           protein K03B4.6 protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 289 CLEKIKRQHPNIDKLSHDQLKYTIQILNKFNITPLEACENAHIFCMNSITMDNYGE 456
           CL K+++ +PN+ K + +   + IQ     NIT L+    A  +CM  I   + GE
Sbjct: 242 CLSKLRKTNPNLSKYTCE--NFDIQTK---NITTLKRIFTADKWCMEWIMRKHCGE 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,817,080
Number of Sequences: 27780
Number of extensions: 426379
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)