Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0932
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 247 RSTQQITGQNLSSTCLEKIKRQHPNIDKLSHDQLKYTIQILN 372
           RS +  TG     T  +K + +  NID++S     +   +LN
Sbjct: 376 RSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFLFAVLN 417


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 832 Q*PKGFPGMXXPLGF-KVWKXQVILPVIFGTPSSFQWXNPXFQIGFPNTAHTN 677
           Q P+  P M  P+ +       VI P + GTPS+     P       + +H N
Sbjct: 821 QPPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFLIPEQTSISHEN 873


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 588 GFTKTVS*LGQRVIKRLASFYRFNHIYFTRFV 683
           G+  TVS     V+ R+ +F+R   +Y + FV
Sbjct: 97  GWAITVSWKAGDVMCRIMAFFRMFGLYLSSFV 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,881
Number of Sequences: 438
Number of extensions: 5145
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)