Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0930
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    29   1.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    27   3.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   4.3  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   4.3  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   5.6  
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    25   9.8  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   9.8  

>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 750 WGQAFTTGRINQGALFFVSSKTKRRTAIGRK 658
           W QA  TG +N G LF     +    AIG+K
Sbjct: 56  WRQALLTGTVNAGCLFGAMLSSPFTEAIGKK 86


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 750 WGQAFTTGRINQGALFFVSSKTKRRTAIGRK 658
           W QA  TG IN G LF     +     IG+K
Sbjct: 56  WRQALLTGTINAGCLFGAMLSSPFTERIGKK 86


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 590 TTRVVYYINTIIIPKHDHAVRAFLRPMAVRRLVFELTKKR 709
           T  +VY I T+ +    H V + +R   ++ L++  TKKR
Sbjct: 147 TETLVYDIYTLCLVSWHHHVFSHIRDSLLQNLLYMFTKKR 186


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 661 TPDGGATFSFRANEKESSLVDPASSKCLAPKXKPHVPSGKPY*XDTA 801
           T  G   +SF A   +S L  PA++    P+    V  G  Y  D++
Sbjct: 396 TTSGTFNYSFNATNPQSILQRPATTSSAVPQLPKSVTPGLAYPHDSS 442


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 635 HDHAVRAFLRPMAVRRLVFELTKKRAPWLILPVVNAWPQXLSLMSPVASRI 787
           HD+ VR+F   +  +  VF   +K   WL +   N+    L +  P AS +
Sbjct: 145 HDNIVRSFQPSIHGKTFVFANHEKSFYWLDVSAANSHSALLKMEFPRASPV 195


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 94  SPQCIYVKLLTGQDIYERWIDTSD 23
           S QC+   L    D+Y  WID  D
Sbjct: 55  SHQCLITALSAPIDVYSDWIDACD 78


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 287 DGMFVRLVHF*FQNETIKRTNAPVRSVVYVILYVPCAILKFYSLKRIIIFHMVFLFKH 460
           DGM V   +F  +  T+K +    R  V +++   CA   F+    +I + + F+ KH
Sbjct: 178 DGMAVPFFYFAIKLLTVKPSRNAGRDWVLLVVLYECAFGIFFGC--VIGYLLSFILKH 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,720
Number of Sequences: 5004
Number of extensions: 55291
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)