Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0929
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 69 5e-12
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 56 3e-08
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 31 0.85
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 31 1.1
03_03_0267 + 16041974-16042549 30 2.0
04_04_0981 + 29912275-29912814 29 4.5
02_05_0218 + 26860319-26862448 29 4.5
11_06_0354 - 22605903-22606145,22606239-22606442,22607227-226074... 29 6.0
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911... 29 6.0
07_03_0846 - 21983581-21986055 29 6.0
06_02_0019 - 10656005-10657511,10657712-10658739 29 6.0
04_04_1389 + 33181459-33181593,33181666-33181847,33181958-331820... 29 6.0
02_05_0710 - 31115116-31115214,31115747-31115851,31116210-311162... 29 6.0
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 28 7.9
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 68.9 bits (161), Expect = 5e-12
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +1
Query: 256 NSHWLVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCY 420
NS+W+VRP + K+G I+ + IRLQH+ T+K LHSH SPLSGN EVSC+
Sbjct: 80 NSYWIVRPSPDSSAKQGDAIETGSIIRLQHMRTRKWLHSHLHASPLSGNLEVSCF 134
Score = 55.6 bits (128), Expect = 5e-08
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +2
Query: 110 AAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDT 256
AA+ V GS +KL++ K RLHSHDV YGSGSGQQSVT DD+
Sbjct: 31 AAEGVEVAYGSTIKLMHEKTKHRLHSHDVPYGSGSGQQSVTGFPEVDDS 79
Score = 36.7 bits (81), Expect = 0.023
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 504 KIRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQAS*GLFV 650
++RHVDTG YL + + R GQ E+ GV + A W A+ G+++
Sbjct: 164 RLRHVDTGGYLHSHNKKYNRLGGGQQEVCGVREK-RAENIWLATEGVYL 211
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 56.4 bits (130), Expect = 3e-08
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2
Query: 128 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDT 256
+T GS +KL++ K RLHSHDV YGSGSGQQSVT+ DD+
Sbjct: 331 ITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTSFPNVDDS 373
Score = 36.3 bits (80), Expect = 0.030
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 504 KIRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQAS*GLFV 650
++RHVDTG YL R + R GQ E+ GV + W A+ G+++
Sbjct: 432 RLRHVDTGGYLHSHDRKYTRIAGGQQEVCGVGDKRPDNV-WLAAEGVYL 479
Score = 28.7 bits (61), Expect(2) = 0.013
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 256 NSHWLVRPMTGETCKRGAPIKCNT 327
NS+W+VRP + K+G PI T
Sbjct: 374 NSYWIVRPQPDTSAKQGDPITHGT 397
Score = 27.9 bits (59), Expect(2) = 0.013
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 322 NTNIRLQHVATKKNLHSH--FFTSPLSGNQEV 411
N IRL+HV T LHSH +T G QEV
Sbjct: 428 NQKIRLRHVDTGGYLHSHDRKYTRIAGGQQEV 459
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 291 FSCHRA-NQPVTIVSSETSTAVTDCCPDPDPY 199
F C A + P+TI SS + + DCC D Y
Sbjct: 81 FYCQNAGHSPITIFSSRVNDGICDCCDGSDEY 112
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 525 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQAS*GLFVHP 656
G + G+G F P+ G +VG ++ G Y + S G++VHP
Sbjct: 106 GPFGNGAGTPFAVPVLNNGSVVGFFARAGPYLE---SIGIYVHP 146
>03_03_0267 + 16041974-16042549
Length = 191
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 525 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQAS*GLFVHP 656
G + G+G F P+ G G +VG + GAY + + G++V+P
Sbjct: 145 GPFGYGAGTPFSVPVRGDGGVVGFFVRAGAYLE---AIGVYVNP 185
>04_04_0981 + 29912275-29912814
Length = 179
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/59 (23%), Positives = 23/59 (38%)
Frame = +2
Query: 95 SEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDTIVTGW 271
S + AA G + LI + ++ L S V G G G + + + + GW
Sbjct: 52 SSSSSAASGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRGIVVRDERPKSRAFGW 110
>02_05_0218 + 26860319-26862448
Length = 709
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 287 PVIGRTSQ*LLYHQRPQPPSQTAVL 213
P++G Q LL H +PQPP+ A L
Sbjct: 241 PLLGAQPQFLLNHYQPQPPNPAAAL 265
>11_06_0354 -
22605903-22606145,22606239-22606442,22607227-22607490,
22607945-22608142,22608238-22608498,22608977-22609183,
22610004-22610207,22610455-22610520,22610717-22610949,
22610982-22611051,22611109-22611136,22611243-22611367,
22611950-22612051
Length = 734
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 525 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQAS*GLFVHPGELLPHQ 677
G Y G F PI +G IVG + G Y D + G++V+P + H+
Sbjct: 383 GPYGQVGGTPFQIPIQIKGSIVGFFGRVGWYVD---AFGIYVNPNQDATHE 430
>08_02_0216 +
14390739-14390847,14390983-14391017,14391112-14391153,
14391253-14391346,14391476-14391672,14392407-14392424,
14392938-14393182,14393300-14393657,14393741-14394316,
14395172-14395447
Length = 649
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 177 LNFKSVLMSFNIDPHVTNSFFAASVFSLIIEMRNTTVTKV 58
LNF + ++ N DPH F +VF L E R +T++
Sbjct: 513 LNFSNPVIVKNFDPHACGWAFGMNVFDL-AEWRRQNITEI 551
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 253 YNSHWLVRPMTGETCKRGAPIKCNTN 330
+ S W ++ TG CKR P++C TN
Sbjct: 321 FQSDWDLQDFTGG-CKRNVPLQCQTN 345
>06_02_0019 - 10656005-10657511,10657712-10658739
Length = 844
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +2
Query: 50 SIATLVTVVFLISIISEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQ-S 226
S + + +VV ++ ++ E NE+ +LK +NT + L + V YG+GS ++
Sbjct: 719 STSFMASVVVIVLLLPESASPHVNEW-----LLKAMNTTIVLDMIGLLVAYGAGSSREWE 773
Query: 227 VTAVEVSDDTIVTGWFAL 280
+ ++ +V G+ A+
Sbjct: 774 TSGYVIAMAVVVLGYIAV 791
>04_04_1389 +
33181459-33181593,33181666-33181847,33181958-33182057,
33182134-33182207,33182484-33182542,33182585-33182665,
33182745-33182815,33183072-33183155,33183590-33183643
Length = 279
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 623 LASKLRSLCSSWRTITTSACCTYRVII 703
L S LR L +W ++TT+ CC V++
Sbjct: 155 LDSALRELLWTWDSLTTATCCKSLVVV 181
>02_05_0710 -
31115116-31115214,31115747-31115851,31116210-31116260,
31116393-31116494,31116651-31116883,31117306-31117497,
31118142-31118322,31118424-31118623,31119105-31119645
Length = 567
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 493 DTPVKLDMLILDRILQAPGEHLVVPSMV-----KARLSE*VHNMVLTLTGKQVK 639
D PVKL + L + Q+P E LVV S V E V+ VL G+ VK
Sbjct: 457 DAPVKLLVKHLHAMAQSPDEQLVVVSQVLVADINIGYEEIVNTQVLAFNGQPVK 510
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 177 LNFKSVLMSFNIDPHVTNSFFAASVFSLI 91
LNF ++S IDPH F ++F LI
Sbjct: 406 LNFSHPIISSKIDPHTCGWAFGMNIFDLI 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,912,586
Number of Sequences: 37544
Number of extensions: 459350
Number of successful extensions: 1039
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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