Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0929
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)                    75   5e-14
SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_22865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)
          Length = 271

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 37/86 (43%), Positives = 47/86 (54%)
 Frame = +1

Query: 310 PIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXXNWTVVCNNDYWR 489
           PIKC+  IRLQH+ATK+NLHSH F SP+S NQEVS +           +W VVC+   W 
Sbjct: 3   PIKCDETIRLQHLATKRNLHSHHFQSPISHNQEVSAF-GEGGNGDNLDDWVVVCSKKNWE 61

Query: 490 RDTPVKLDMLILDRILQAPGEHLVVP 567
           R   V+    I +  L   G+    P
Sbjct: 62  RKDTVRFRHKITEMYLHITGDQFGRP 87



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +3

Query: 486 EERYTSKIRHVDTGSYLAGSGRTFGRPINGQGEIVG-----VSSQYGAYTDW 626
           E + T + RH  T  YL  +G  FGRPI+GQ E+ G     VS+++    DW
Sbjct: 61  ERKDTVRFRHKITEMYLHITGDQFGRPIHGQREVSGFNYPDVSNEWKTMEDW 112


>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 696 TLYVQHADVVIVLQDEQRDLNLLASQCKHHIVNSLRQSRL 577
           +L + H D + V   +  D+ LLA QCK H++  L + RL
Sbjct: 134 SLLLFHLDRLDVDVSQTMDVLLLAKQCKLHVLKQLLEMRL 173


>SB_22865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 306 TTLAGFSCHRAN-QPVTIVSSETSTAVTDCCPDPDPY 199
           TT+   SCH+   + +  VSS++     DCC D  PY
Sbjct: 137 TTIRNSSCHKHTWRQLKTVSSQSRGQTQDCCQD-SPY 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,739,406
Number of Sequences: 59808
Number of extensions: 542742
Number of successful extensions: 1270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)